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. Author manuscript; available in PMC: 2022 Dec 6.
Published in final edited form as: Curr Biol. 2021 Oct 18;31(23):5227–5237.e7. doi: 10.1016/j.cub.2021.09.050

KEY RESOURCES TABLE.

REAGENT or RESOURCE SOURCE IDENTIFIER
Antibodies
Rabbit Anti-GFP Abcam Cat: ab290
Mouse Anti-HA BioLegend Cat: MMS-101R
Rabbit Anti-Histone H3 Abcam Cat: ab1791
Mouse Anti-PGK1 Abcam Cat: ab113687
Mouse Anti-FLAG (M2) Sigma Cat: F3165
Mouse Anti-Vinculin Sigma Cat: V9131
Rabbit Anti-H3S10ph EMD Millipore Cat: 06–570
Mouse Anti-E1A BD Biosciences Cat: 554155
Mouse Anti-E1B-55 kDa Laboratory of A. Levine N/A
Rabbit Anti-Cre EMD Millipore Cat: 69050
Rabbit Anti-VII Laboratory of L. Gerace N/A
Mouse Anti-VII Laboratory of H. Wodrich33 N/A
Rabbit Anti-Geminin Cell Signaling Technology Cat: 52508
Rabbit Anti-CDT1 Cell Signaling Technology Cat: 8064S
Rabbit Anti-Thymidine Kinase 1 Cell Signaling Technology Cat: 28755S
Rabbit Anti-H3S10ph Cell Signaling Technology Cat: 53348
Rabbit Anti-Cyclin A2 Cell Signaling Technology Cat: 91500S
Rabbit Anti-Cyclin B1 Cell Signaling Technology Cat: 12231
Rabbit Anti-Cyclin E1 Cell Signaling Technology Cat: 20808S
Rabbit Anti-phCDC2 Cell Signaling Technology Cat: 4539
Mouse Anti-CDC2 p34 Santa Cruz Biotechnology Cat: sc-54
Peroxidase AffiniPure Goat Anti-Rabbit IgG (H+L) Jackson ImmunoResearch Cat: 111-035-045
Peroxidase AffiniPure Goat Anti-Mouse IgG (H+L) Jackson ImmunoResearch Cat: 115-035-003
Goat anti-Rabbit IgG (H+L) Cross-Adsorbed Secondary Antibody, Alexa Fluor 488 Invitrogen Cat: A11008
Goat anti-Mouse IgG (H+L), Superclonal™ Recombinant Secondary Antibody, Alexa Fluor 555 Invitrogen Cat: A28180
Bacterial and virus strains
rAdV-GFP Laboratory of D. Curiel23 N/A
rAdV-VII-GFP Laboratory of D. Curiel23 N/A
Tuner™(DE3) pLacI Competent E. coli Cells Millipore Sigma Cat: 70625-4
WT Adenovirus Type 5 Laboratory of M. Weitzman N/A
loxP-VII-loxP Adenovirus Type 5 Laboratory of P. Hearing48 N/A
Biological samples
VII-3xHA gBlock Gene Fragment Integrated DNA Technologies N/A
ΔPTM-3xHA gBlock Gene Fragment Integrated DNA Technologies N/A
V-3xHA PriorityGENE GeneWiz N/A
3xFLAG-HMGB1 PriorityGENE GeneWiz N/A
3xFLAG-SET PriorityGENE GeneWiz N/A
3xFLAG-H1.5 PriorityGENE GeneWiz N/A
Chemicals, peptides, and recombinant proteins
SC-Ura Powder Sunrise Science Products Cat: 1306-030
SC-His Powder Sunrise Science Products Cat: 1303-030
Yeast Nitrogen Base Sunrise Science Products Cat: 1501-250
Raffinose Fisher Cat: AC195675000
Galactose Fisher Cat: BP656-500
Dextrose Fisher Cat: D16-500
ProLong Gold Antifade Mounting Solution Invitrogen Cat: P36934
Invitrogen Protein G Dynabeads for Immunoprecipitation ThermoFisher Cat: 10004D
AMPure XP Beads Beckman Coulter Cat: A63880
Tetracycline-free Fetal Bovine Serum Gemini Bio-Products Cat: 100-800; Lot #A69G00J
Doxycycline Fisher Bioreagents Cat: BP26535
MilliporeSigma™ Calbiochem™ DAPI Stain MilliporeSigma Cat: 50-874-10001
Propidium iodide Fisher Cat: AC440300250
RO-3306 Sigma-Aldrich Cat: SML0569-5MG
Tat-Cre 57 N/A
Opti-MEM Reduced Serum Media ThermoFisher Cat: 31985070
Critical commercial assays
Unique Dual-Indexed Adapter Kit KAPA Biosystems Cat: KK8727
Hyper Prep Kit KAPA Biosystems Cat: KK8504
Qubit dsDNA HS Assay Kit Invitrogen Cat: Q32851
High Sensitivity D5000 ScreenTape System Agilent Cat: 5067-5592
Clarity Western ECL Substrate BioRad Cat: 1705061
RNeasy Plus Mini Kit Qiagen Cat: 74104
iScript Reverse Transcription Supermix BioRad Cat: 1708841BUN
QIAamp DNA Mini Kit Qiagen Cat: 51304
Deposited data
Analyzed ChIP-seq data This paper GEO: #GSE164684
Experimental models: Cell lines
Human: RPE-1 cell line (hTERT immortalized) Laboratory of E. Hatch N/A
Human: HEK 293T HILO acceptor cells Laboratory of E. Makeyev23,63 N/A
Human: HEK 293 Cre Laboratory of P. Hearing48 N/A
Human: HEK 293 cell line Laboratory of M. Weitzman N/A
Human: A549 cell line Laboratory of A. Berger N/A
Experimental models: Organisms/strains
S. cerevisiae: Strain background: WT W303 Laboratory of B. Brewer and M.K. Raghuraman N/A
S. cerevisiae: Strain background: W303 hmo1::KanMx Laboratory of T. Tsukiyama N/A
S. cerevisiae: Strain background: W303 hho1::KanMx Laboratory of T. Tsukiyama N/A
S. cerevisiae: Strain background: W303 nap1::HYG Laboratory of T. Tsukiyama N/A
S. cerevisiae: Strain background: W303 nap1::HYG hmo1::HIS3 This paper N/A
S. cerevisiae: Strain background: W303 nhp6a::HYG nhp6b::NAT Laboratory of T. Tsukiyama N/A
S. cerevisiae: Strain background: WT FY602 Laboratory of L. Howe35 N/A
S. cerevisiae: Strain background: FY602 hmo1::HIS3 This paper N/A
S. cerevisiae: Strain background: FY602 nap1::KanMx This paper N/A
S. cerevisiae: Strain background: FY602 hho1::KanMx This paper N/A
S. cerevisiae: Strain background: FY602 hmo1::HIS3 nap1::KanMx This paper N/A
Oligonucleotides
See Table S2 for oligonucleotide information
Recombinant DNA
pRS416-GAL1-10-DVNP-3xHA-NLS Laboratory of L. Howe35 N/A
pRS416-GAL1-10-GFP This paper N/A
pRS416-GAL1-10-VII-3xHA This paper N/A
pRS416-GAL1-10-VII-ΔPTM-3xHA This paper N/A
pRS416-GAL1-10-V-3xHA This paper N/A
pRS416-3xFLAG-HMGB1-biGAL1-10-GFP This paper N/A
pRS416-3xFLAG-SET-biGAL1-10-GFP This paper N/A
pRS416-3xFLAG-H1.5-biGAL1-10-GFP This paper N/A
pRS416-3xFLAG-HMGB1-biGAL1-10-VII-3xHA This paper N/A
pRS416-3xFLAG-SET-biGAL1-10-VII-3xHA This paper N/A
pRS416-3xFLAG-H1.5-biGAL1-10-VII-3xHA This paper N/A
pTriEx-HTNC 57 Addgene Plasmid #13763
DA0045-VII-HA 23 N/A
DA0173-GFP 23 N/A
DA0048-PRM1-HA 23 N/A
DA0049-V-HA 23 N/A
DA0021-Cre 23 N/A
Software and algorithms
GraphPad Prism v9.0 GraphPad Software https://www.graphpad.com/
Image Lab v6.1 BioRad https://www.bio-rad.com/en-us/product/image-lab-software?ID=KRE6P5E8Z
Bowtie2 Publicly available http://bowtie-bio.sourceforge.net/bowtie2/index.shtml
deepTools2 Publicly available https://deeptools.readthedocs.io/en/develop/
MACS2 Publicly available https://github.com/macs3-project/MACS
Adobe Creative Cloud Photoshop Adobe Inc. https://www.adobe.com/creativecloud.html
Adobe Creative Cloud Illustrator Adobe Inc. https://www.adobe.com/creativecloud.html
FlowJo v10 FlowJo, Inc. https://www.flowjo.com/solutions/flowjo
CFX Maestro v2.2 BioRad https://www.bio-rad.com/en-us/sku/12013758-cfx-maestro-software-2-0-for-windows-pc?ID=12013758
Leica Application Suite V4.12 Leica Microsystems https://www.leica-microsystems.com/products/microscope-software/p/leica-application-suite/downloads/
Fiji for Mac OS X Publicly available https://fiji.sc/