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. Author manuscript; available in PMC: 2023 Jan 1.
Published in final edited form as: Arthroscopy. 2021 Jun 12;38(1):38–48. doi: 10.1016/j.arthro.2021.05.064

Table 2.

Summary of target genes, primer sequences, and polymerase chain reaction amplification protocol for gene transcript analysis.

Target Gene Name Primer Sequences (F: Forward, R: Reverse) PCR Amplification Protocol
Collagen Type 1 F: 5′-GGC GAG AGA GGT GAA CAA GG-3′ Activation:
95°C for 15 minutes

Cycling (45 cycles):
1) Denaturation: 94°C for 15 seconds.
2) Anneal: 51°C for 30 seconds.
3) Extension: 72°C for 30 seconds.
R: 5′-GGC GAG AGA GGT GAA CAA GG-3′
Collagen Type 3 F: 5′-AGA AGG CCC TGA AGC TGA TG-3′
R: 5′-TGT TTC GTG CAA CCA TCC TC-3′
Tenascin C F: 5′-TTC AGG AAC CCA GAG GAA GC-3′
R: 5′-TCC GGT TCG GCT TCT GTA AC-3′
Scleraxis B F: 5′-CTG GCC TCC AGC TAC ATC TC-3′
R: 5′-CTT TCT CTG GTT GCT GAG GC-3′
GAPDH F: 5′-CCC ACT CCT CCA CCT TTG AC-3′
R: 5′-CCA CCA CCC TGT TGC TGT AG-3′