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. 2021 Dec 13;126:102779. doi: 10.1016/j.jaut.2021.102779

Fig. 1.

Fig. 1

Relative abundance (RA) of signature Omicron variant mutations.Panel A shows the RA of Spike signature mutations and high prevalent mutations in OFR1a and ORF1b. Panel B shows the RA of Omicron variant mutations in ORF1a and ORF1b and signature mutations in structural proteins E, M, and N. Please note ORF1b:P314L corresponds to nsp12 mutation nsp12:P323L. Panel C shows the phylogenetic relationship among different SARS-CoV-2 variants. The GISAID identification numbers for the sequences used in Panel B are as below. 1_Alpha to 10_Alpha: EPI_ISL_5803029, EPI_ISL_6000214, EPI_ISL_6026865, EPI_ISL_6027306, EPI_ISL_6141708, EPI_ISL_6227805, EPI_ISL_6229383, EPI_ISL_6251101, EPI_ISL_6383583, EPI_ISL_675143; 1_Beta1 to 10_Beta: EPI_ISL_5053750, EPI_ISL_5274500, EPI_ISL_5430264, EPI_ISL_5515861, EPI_ISL_5524663, EPI_ISL_6422293, EPI_ISL_6699711, EPI_ISL_6751445, EPI_ISL_6774033, EPI_ISL_6774035; 1_Gamma to 10_Gamma: EPI_ISL_6121588, EPI_ISL_6121598, EPI_ISL_6121603, EPI_ISL_6569634, EPI_ISL_6689781, EPI_ISL_6689782, EPI_ISL_6689786, EPI_ISL_6689787, EPI_ISL_6689788, EPI_ISL_6689789; 1_Delta to 10_Delta: EPI_ISL_6739692, EPI_ISL_6739693, EPI_ISL_6761790, EPI_ISL_6763188, EPI_ISL_6769723, EPI_ISL_6772657, EPI_ISL_6775864, EPI_ISL_6775870, EPI_ISL_6795204, EPI_ISL_6809412; 1_ Mu to 10_Mu: EPI_ISL_6526278, EPI_ISL_6526285, EPI_ISL_6569586, EPI_ISL_6569593, EPI_ISL_6569599, EPI_ISL_6569609, EPI_ISL_6569625, EPI_ISL_6569673, EPI_ISL_6675615, EPI_ISL_6675624, and 1_Omicron to 10_ Omicron: EPI_ISL_6752026, EPI_ISL_6774086, EPI_ISL_6699747, EPI_ISL_6699744, EPI_ISL_6699751, EPI_ISL_6752027, EPI_ISL_6699728, EPI_ISL_6699764, EPI_ISL_6699734, EPI_ISL_6698790.