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. 2021 Dec 13;22:337. doi: 10.1186/s13059-021-02561-2

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© The Author(s) 2021

Open AccessThis article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons licence, and indicate if changes were made. The images or other third party material in this article are included in the article's Creative Commons licence, unless indicated otherwise in a credit line to the material. If material is not included in the article's Creative Commons licence and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this licence, visit http://creativecommons.org/licenses/by/4.0/. The Creative Commons Public Domain Dedication waiver (http://creativecommons.org/publicdomain/zero/1.0/) applies to the data made available in this article, unless otherwise stated in a credit line to the data.

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Fig. 5 — CIDER identified cross-condition cell classes in the PBMC data from healthy donors and patients with COVID-19 or influenza (Dataset 5). A–C The distribution of ARI_population (A), 1-ARI_batch (B), and runtime (C) of benchmarked algorithms. SC3 and RaceID were ran on the dataset downsampled by the factor of 5. D–G Dendrograms show the local relationships of the classical monocyte population (D), nonclassical monocyte population (E), the EM-like CD8 T cell population (F), and the natural killer (NK) population (G) from donors with different health conditions