TABLE 1.
Mutation statistics of 71,038 global and 10,286 Indian SARS-CoV-2 genomes by considering different threshold values.
| Threshold value | Coding regions of global SARS-CoV-2 genomes | |||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NSP1 | NSP2 | NSP3 | NSP4 | 3CL-Pro | NSP6 | NSP7 | NSP8 | NSP9 | NSP10 | NSP11 | RdRp | Helicase | Exon | endoRNAse | NSP16 | Spike | ORF3a | Envelope | Membrane | ORF6 | ORF7a | ORF7b | ORF8 | Nucleocapsid | ORF10 | |
| > =0.60 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 3 | 0 |
| > =0.50 to < 0.60 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| > =0.40 to < 0.50 | 0 | 1 | 4 | 0 | 0 | 8 | 0 | 0 | 0 | 0 | 0 | 3 | 0 | 0 | 0 | 0 | 13 | 1 | 0 | 0 | 0 | 0 | 0 | 3 | 4 | 0 |
| > =0.30 to < 0.40 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 |
| > =0.20 to < 0.30 | 1 | 1 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 6 | 1 | 0 | 3 | 0 | 2 | 0 | 1 | 3 | 1 |
| > =0.10 to < 0.20 | 1 | 3 | 7 | 4 | 1 | 3 | 0 | 0 | 0 | 0 | 0 | 6 | 3 | 3 | 1 | 1 | 14 | 1 | 0 | 0 | 0 | 0 | 1 | 7 | 8 | 0 |
| > =0.05 to < 0.10 | 1 | 3 | 18 | 3 | 2 | 2 | 0 | 0 | 3 | 0 | 0 | 5 | 6 | 2 | 4 | 1 | 25 | 7 | 0 | 2 | 1 | 2 | 0 | 2 | 5 | 0 |
| Threshold value | Coding regions of Indian SARS-CoV-2 genomes | |||||||||||||||||||||||||
| > =0.60 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 2 | 1 | 0 | 1 | 0 | 1 | 0 | 1 | 4 | 0 |
| > =0.50 to < 0.60 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 0 | 1 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 1 | 0 |
| > =0.40 to < 0.50 | 0 | 0 | 1 | 0 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 1 | 1 | 0 | 0 | 0 | 9 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 1 | 0 |
| > =0.30 to < 0.40 | 1 | 1 | 4 | 1 | 0 | 1 | 0 | 0 | 0 | 0 | 0 | 0 | 1 | 0 | 1 | 0 | 6 | 0 | 0 | 0 | 0 | 0 | 0 | 4 | 1 | 0 |
| > =0.20 to < 0.30 | 0 | 3 | 4 | 3 | 0 | 5 | 0 | 0 | 1 | 0 | 0 | 4 | 1 | 0 | 2 | 1 | 16 | 1 | 0 | 1 | 0 | 1 | 0 | 4 | 4 | 0 |
| > =0.10 to < 0.20 | 0 | 1 | 12 | 5 | 0 | 10 | 0 | 0 | 1 | 0 | 0 | 3 | 2 | 3 | 1 | 1 | 8 | 2 | 0 | 0 | 2 | 0 | 1 | 2 | 4 | 0 |
| > =0.05 to < 0.10 | 0 | 7 | 11 | 4 | 1 | 5 | 0 | 1 | 1 | 0 | 0 | 4 | 1 | 8 | 1 | 3 | 53 | 3 | 0 | 11 | 0 | 0 | 0 | 5 | 7 | 1 |