Table 2. Summary of repeat sequences and SSRs in five Hordeum chloroplast genomes.
Species | Hordeum brevisubulatum | Hordeum vulgare subsp. vulgare | Hordeum jubatum | Hordeum vulgare subsp. spontaneum | Hordeum bogdanii |
---|---|---|---|---|---|
Total dispersed repeat | 53 | 47 | 70 | 47 | 45 |
Complement | 0 | 0 | 2 | 0 | 0 |
Forward | 34 | 30 | 43 | 31 | 29 |
30-35bp | 21 | 19 | 22 | 19 | 19 |
36-45bp | 7 | 8 | 10 | 9 | 7 |
46-65bp | 3 | 0 | 4 | 0 | 2 |
66-100bp | 1 | 1 | 4 | 1 | 0 |
>100bp | 2 | 2 | 3 | 2 | 1 |
Palindromic | 19 | 17 | 23 | 16 | 16 |
30-35bp | 8 | 8 | 9 | 8 | 8 |
36-45bp | 4 | 4 | 4 | 4 | 4 |
46-65bp | 3 | 0 | 4 | 0 | 2 |
66-100bp | 1 | 1 | 2 | 1 | 0 |
>100bp | 3 | 4 | 4 | 3 | 2 |
Reverse | 0 | 0 | 2 | 0 | 0 |
Total tandem repeat | 85 | 79 | 77 | 80 | 84 |
<10bp | 61 | 64 | 59 | 64 | 61 |
10-20bp | 19 | 13 | 12 | 14 | 18 |
21-30bp | 5 | 2 | 6 | 2 | 5 |
Total SSR number | 182 | 181 | 187 | 180 | 182 |
mononucleotide | 120 | 122 | 128 | 122 | 119 |
dinucleotide | 6 | 6 | 6 | 6 | 7 |
trinucleotide | 45 | 42 | 42 | 41 | 45 |
tetranucleotide | 10 | 10 | 10 | 10 | 10 |
hexanucleotide | 1 | 1 | 1 | 1 | 1 |