Table 2. Metal coordination geometries found in RtcB structures.
Species | PDB ID | Chain | Metal | Ligand | Metal coordination geometry | |
---|---|---|---|---|---|---|
Position A | Position B | |||||
Homo sapiens | 7P3B | A, B | Co2+ | GMP | Tetrahedral | Octahedral |
Pyrococcus horikoshii | 4DWQ | A, B | Mn2+ | GMP* | Trigonal bipyramidal | − |
4IT0 | A | Mn2+ | GMP* | Tetrahedral | Trigonal pyramidal | |
B | Mn2+ | − | Tetrahedral | Tetrahedral | ||
4ISZ | A | Mn2+ | GTPαS | Tetrahedral | Tetrahedral | |
B | Mn2+ | GTPαS | Trigonal bipyramidal | Tetrahedral | ||
4DWR | A, B, C | Mn2+ | SO42- | Octahedral | Tetrahedral | |
4ISJ | A, B | Mn2+ | − | Tetrahedral | − |
Denotes a GMP ligand covalently bound to the His404 of PhRtcB.