Table 2.
Data collection and refinement statistics of TnIYD structures
Process | Tyr bound to TnIYD | I-Tyr bound to TnIYD |
---|---|---|
PDB ID | 6PZ0 | 6Q1L |
Data collection | ||
Space group | P212121 | P212121 |
Unit Cell | ||
a,b,c (Å) | 42.88, 81.82, 103.75 | 42.86, 81.23, 103.90 |
α = β = γ (°) | 90 | 90 |
Number of unique reflectionsa | 34,678 (1965) | 47,126 (2264) |
Number of observed reflectionsa | 225,230 (11,584) | 211,852 (9484) |
Resolution (Å)a | 35.67–1.80 (1.84–1.80) | 37.91–1.60 (1.63–1.60) |
Rpim (%)a,b | 4.3(13.8) | 3.9 (38.0) |
I/σa | 15.1(5.1) | 10.7 (2.1) |
Completeness (%)a | 99.8 (97.7) | 96.9 (95.5) |
Redundancya | 6.5 (5.9) | 4.5 (4.2) |
Refinement | ||
Rcryst (%)a,c | 15.83 (16.63) | 17.04 (22.607) |
Rfree (%)a,c | 20.10 (21.59) | 20.26 (25.27) |
Ramachandran analysis | ||
Favored (%) | 97.85 | 98.63 |
Allowed (%) | 2.15 | 1.37 |
rmsd bonds | 0.007 | 0.010 |
rmsd angles | 1.051 | 1.3 |
Average B-factor for protein (Å2) | 23.55 | 21.81 |
Average B-factor for water (Å2) | 31.15 | 31.30 |
Average B-factor for ligands (Å2) | 15.21 | 14.49 |
The values in parentheses are for the highest resolution shell.
, where Ii is the intensity of an individual reflection and <I> is the mean intensity obtained from multiple observations of symmetry-related reflections.
, where Fo is an observed amplitude and Fc a calculated amplitude; Rfree is the same statistic calculated over a subset of the data that has not been used for refinement.