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. 2021 Nov 6;297(6):101385. doi: 10.1016/j.jbc.2021.101385

Table 2.

Data collection and refinement statistics of TnIYD structures

Process Tyr bound to TnIYD I-Tyr bound to TnIYD
PDB ID 6PZ0 6Q1L
Data collection
 Space group P212121 P212121
 Unit Cell
 a,b,c (Å) 42.88, 81.82, 103.75 42.86, 81.23, 103.90
 α = β = γ (°) 90 90
 Number of unique reflectionsa 34,678 (1965) 47,126 (2264)
 Number of observed reflectionsa 225,230 (11,584) 211,852 (9484)
 Resolution (Å)a 35.67–1.80 (1.84–1.80) 37.91–1.60 (1.63–1.60)
 Rpim (%)a,b 4.3(13.8) 3.9 (38.0)
 I/σa 15.1(5.1) 10.7 (2.1)
 Completeness (%)a 99.8 (97.7) 96.9 (95.5)
 Redundancya 6.5 (5.9) 4.5 (4.2)
Refinement
 Rcryst (%)a,c 15.83 (16.63) 17.04 (22.607)
 Rfree (%)a,c 20.10 (21.59) 20.26 (25.27)
 Ramachandran analysis
 Favored (%) 97.85 98.63
 Allowed (%) 2.15 1.37
 rmsd bonds 0.007 0.010
 rmsd angles 1.051 1.3
 Average B-factor for protein (Å2) 23.55 21.81
 Average B-factor for water (Å2) 31.15 31.30
 Average B-factor for ligands (Å2) 15.21 14.49
a

The values in parentheses are for the highest resolution shell.

b

Rpim=hkl(1/(n1))i|IiI|/hkliIi, where Ii is the intensity of an individual reflection and <I> is the mean intensity obtained from multiple observations of symmetry-related reflections.

c

Rcryst is FoFc/Fo, where Fo is an observed amplitude and Fc a calculated amplitude; Rfree is the same statistic calculated over a subset of the data that has not been used for refinement.