Table 2.
Traits associated with variants within the CCR5 gene region (chr3:46,353,419-46,409,888, hg38) of Figure 3B.
| Study ID | Trait | P-value | Beta | Publication |
|---|---|---|---|---|
| GCST004433 | Macrophage inflammatory protein 1b levels | 7.57E-115 | 0.4985 | PMID:27989323 |
| GCST90002340 | Monocyte count | 1.11E-75 | 0.035585 | PMID:32888493 |
| NEALE2_30190_raw | Monocyte percentage | 4.35951E-50 | 0.0963857 | UKB Neale v2 |
| GCST004609 | Monocyte percentage of white cells | 1.051E-33 | 0.04394357 | PMID:27863252 |
| NEALE2_6149_1 | Mouth ulcers | mouth/teeth dental problems | 4.03372E-32 | 0.093964676 | UKB Neale v2 |
| GCST004608 | Granulocyte percentage of myeloid white cells | 2.358E-25 | -0.03789086 | PMID:27863252 |
| NEALE2_30130_raw | Monocyte count | 1.90975E-22 | 0.00516017 | UKB Neale v2 |
| GCST004625 | Monocyte count | 5.757E-22 | 0.03506334 | PMID:27863252 |
| GCST004438 | Monocyte chemoattractant protein-1 levels | 1.05E-19 | 0.2902 | PMID:27989323 |
| GCST90002292 | Basophil count | 4.85E-17 | -0.018406 | PMID:32888493 |
| GCST90002316 | Lymphocyte counts | 4.44E-14 | 0.021045 | PMID:32888493 |
| NEALE2_30300_raw | High light scatter reticulocyte count | 7.77011E-14 | 0.000252296 | UKB Neale v2 |
| NEALE2_30180_raw | Lymphocyte percentage | 2.13306E-11 | 0.159232 | UKB Neale v2 |
| NEALE2_30120_raw | Lymphocyte count | 2.24757E-10 | 0.0233973 | UKB Neale v2 |
| NEALE2_30290_raw | High light scatter reticulocyte percentage | 3.2664E-10 | 0.00704487 | UKB Neale v2 |
| GCST003045 | Ulcerative colitis [EA] | 1.3229E-08 | 0.0757873 | PMID:26192919 |
| NEALE2_6149_100 | None of the above | mouth/teeth dental problems | 2.22533E-08 | -0.027486511 | UKB Neale v2 |
| NEALE2_30150 | Eosinophill count | 2.81799E-08 | 0.00995217 | UKB Neale v2 |
| NEALE2_30260_raw | Mean reticulocyte volume | 7.16666E-08 | -0.137991 | UKB Neale v2 |
| NEALE2_30250_raw | Reticulocyte count | 8.74646E-08 | 0.000690186 | UKB Neale v2 |