Table 1. Alu elements in the RBMX2 gene.
Sequence name | Model accession | Model name | Bit score | e-value | Model start | Model end | Strand | Alignment start | Alignment end | Envelope start | Envelope end |
---|---|---|---|---|---|---|---|---|---|---|---|
Intron3 | DF0000047 | AluSx | 340.6 | 1.6e-101 | 1 | 308 | + | 647 | 957 | 647 | 960 |
Intron3 | DF0000303 | L1ME4a_3end | 30.8 | 1.1e-07 | 725 | 869 | - | 1084 | 963 | 1096 | 962 |
Intron3 | DF0000303 | L1ME4a_3end | 118.0 | 4.7e-34 | 160 | 504 | - | 1390 | 1099 | 1409 | 1088 |
Intron3 | DF0000053 | AluYa5 | 382.8 | 3.1e-114 | 1 | 310 | - | 1704 | 1394 | 1704 | 1374 |
Intron3 | DF0000303 | L1ME4a_3end | 69.0 | 3.1e-19 | 1 | 172 | - | 1877 | 1708 | 1877 | 1705 |
Intron3 | DF0000048 | AluSx1 | 320.7 | 1.8e-95 | 1 | 306 | + | 1942 | 2246 | 1942 | 2250 |
Intron3 | DF0000845 | Tigger4a | 28.8 | 2.2e-06 | 199 | 236 | - | 1947 | 1910 | 1954 | 1910 |
Intron3 | DF0000846 | Tigger4b | 241.9 | 2.1e-71 | 1 | 341 | - | 2565 | 2243 | 2565 | 2240 |
Intron3 | DF0000281 | L1MC5a_3end | 24.2 | 1.3e-06 | 1566 | 1694 | - | 2688 | 2567 | 2690 | 2546 |
Intron3 | DF0000010 | L1MC4_3end | 46.4 | 2.2e-13 | 2679 | 2786 | - | 2812 | 2703 | 2834 | 2691 |
Intron3 | DF0000147 | FRAM | 67.4 | 3.00E-18 | 66 | 168 | - | 2901 | 2799 | 2917 | 2791 |
Intron3 | DF0000008 | L1M5_orf2 | 20.0 | 1.5e-05 | 1915 | 2111 | - | 3061 | 2909 | 3087 | 2900 |
Intron3 | DF0000035 | AluJr | 247.8 | 2.5e-73 | 4 | 311 | - | 3506 | 3200 | 3509 | 3195 |
Intron3 | DF0001071 | SVA_E | 84.0 | 2.3e-24 | 133 | 317 | + | 3626 | 3835 | 3625 | 3855 |
Intron3 | DF0000144 | FLAM_C | 106.5 | 3.2e-30 | 1 | 139 | - | 3680 | 3552 | 3680 | 3533 |
Intron3 | DF0000144 | FLAM_C | 122.7 | 3.3e-35 | 1 | 139 | - | 3847 | 3709 | 3847 | 3689 |
Intron3 | DF0000008 | L1M5_orf2 | 120.3 | 9.1e-36 | 63 | 1042 | - | 4773 | 3848 | 4794 | 3846 |
The four different types of Alu elements (bolded) were identified in intron 3 of the RBMX2 gene. Two were found on the sense strand and two on the antisense strand. Identification was done using Dfam.