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. 2021 Dec 16;16(12):e0261170. doi: 10.1371/journal.pone.0261170

Table 1. Alu elements in the RBMX2 gene.

Sequence name Model accession Model name Bit score e-value Model start Model end Strand Alignment start Alignment end Envelope start Envelope end
Intron3 DF0000047 AluSx 340.6 1.6e-101 1 308 + 647 957 647 960
Intron3 DF0000303 L1ME4a_3end 30.8 1.1e-07 725 869 - 1084 963 1096 962
Intron3 DF0000303 L1ME4a_3end 118.0 4.7e-34 160 504 - 1390 1099 1409 1088
Intron3 DF0000053 AluYa5 382.8 3.1e-114 1 310 - 1704 1394 1704 1374
Intron3 DF0000303 L1ME4a_3end 69.0 3.1e-19 1 172 - 1877 1708 1877 1705
Intron3 DF0000048 AluSx1 320.7 1.8e-95 1 306 + 1942 2246 1942 2250
Intron3 DF0000845 Tigger4a 28.8 2.2e-06 199 236 - 1947 1910 1954 1910
Intron3 DF0000846 Tigger4b 241.9 2.1e-71 1 341 - 2565 2243 2565 2240
Intron3 DF0000281 L1MC5a_3end 24.2 1.3e-06 1566 1694 - 2688 2567 2690 2546
Intron3 DF0000010 L1MC4_3end 46.4 2.2e-13 2679 2786 - 2812 2703 2834 2691
Intron3 DF0000147 FRAM 67.4 3.00E-18 66 168 - 2901 2799 2917 2791
Intron3 DF0000008 L1M5_orf2 20.0 1.5e-05 1915 2111 - 3061 2909 3087 2900
Intron3 DF0000035 AluJr 247.8 2.5e-73 4 311 - 3506 3200 3509 3195
Intron3 DF0001071 SVA_E 84.0 2.3e-24 133 317 + 3626 3835 3625 3855
Intron3 DF0000144 FLAM_C 106.5 3.2e-30 1 139 - 3680 3552 3680 3533
Intron3 DF0000144 FLAM_C 122.7 3.3e-35 1 139 - 3847 3709 3847 3689
Intron3 DF0000008 L1M5_orf2 120.3 9.1e-36 63 1042 - 4773 3848 4794 3846

The four different types of Alu elements (bolded) were identified in intron 3 of the RBMX2 gene. Two were found on the sense strand and two on the antisense strand. Identification was done using Dfam.