Table 3.
Sequences of 20B and 19B Clades.
| Seq-Name | QC |
Clade | Ns Mut. | S-gene Mut. | non-ACGTN | Ns (missing) | Gaps | Ins. | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| N | M | P | C | F | S | ||||||||
| hCoV-19/Egypt/Egypt-Army-Thirdwave313/2021 EPI_ISL_1936252 |
✓ | ✓ | ✘ | ✓ | ✓ | ✓ | 20B | 23 | N501T-D614G-Q677H | 0 | 0 | 0 | 0 |
| hCoV-19/Egypt/Egypt-Army-Thirdwave314/2021 EPI_ISL_1936253 |
✓ | ✓ | ✘ | ✓ | ✓ | ✓ | 20B | 23 | 0 | 0 | 0 | 0 | |
| hCoV-19/Egypt/Egypt-Army-Thirdwave318/2021 EPI_ISL_1936257 |
✓ | ✓ | ✓ | ✓ | ✓ | ✓ | 19B | 25 | R102S-A292V-N501T-H655Y | 0 | 0 | 0 | 0 |
| hCoV-19/Egypt/Egypt-Army-Thirdwave319/2021 EPI_ISL_1936258 |
✓ | ✓ | ✓ | ✓ | ✓ | ✓ | 19B | 25 | 0 | 0 | 0 | 0 | |
| HCoV-19/Egypt/ARMY-273/2021 EPI_ISL_1936128 |
✓ | ✓ | ✓ | ✓ | ✓ | ✓ | 19B | 26 | 0 | 0 | 0 | 0 | |
| HCoV-19/Egypt/ARMY-274/2021 EPI_ISL_1936129 |
✓ | ✓ | ✓ | ✓ | ✓ | ✓ | 19B | 26 | 0 | 0 | 0 | 0 | |
| HCoV-19/Egypt/ARMY-275/2021 EPI_ISL_1936130 |
✓ | ✓ | ✓ | ✓ | ✓ | ✓ | 19B | 26 | 0 | 0 | 0 | 0 | |
| hCoV-19/Egypt/Egypt-Army-Thirdwave347/2021 EPI_ISL_1936277 |
✓ | ✓ | ✓ | ✓ | ✓ | ✓ | 19B | 26 | 0 | 0 | 0 | 0 | |
| hCoV-19/Egypt/Egypt-Army-Thirdwave348/2021 EPI_ISL_19362778 |
✓ | ✓ | ✓ | ✓ | ✓ | ✓ | 19B | 26 | 0 | 0 | 0 | 0 | |
| hCoV-19/Egypt/Egypt-Army-Thirdwave349/2021 EPI_ISL_1936279 |
✓ | ✓ | ✓ | ✓ | ✓ | ✓ | 19B | 26 | 0 | 0 | 0 | 0 | |
| hCoV-19/Egypt/Egypt-Army-Thirdwave310/2021 EPI_ISL_1936249 |
✓ | ✓ | ✓ | ✓ | ✓ | ✓ | 19B | 26 | 0 | 0 | 0 | 0 | |
| hCoV-19/Egypt/Egypt-Army-Thirdwave311/2021 EPI_ISL_1936250 |
✓ | ✓ | ✓ | ✓ | ✓ | ✓ | 19B | 26 | 0 | 0 | 0 | 0 | |
| hCoV-19/Egypt/Egypt-Army-Thirdwave312/2021 EPI_ISL_1936251 |
✓ | ✓ | ✓ | ✓ | ✓ | ✓ | 19B | 26 | 0 | 0 | 0 | 0 | |
N: Missing Data M: Mixed Sites P: Private Mutations C: Mutation Clusters F: Frame shifts S: Stop codons.