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. 2021 May 13;71(1):121–138. doi: 10.1093/sysbio/syab037

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© The Author(s) 2021. Published by Oxford University Press on behalf of the Society of Systematic Biologists.

This is an Open Access article distributed under the terms of the Creative Commons Attribution License (https://creativecommons.org/licenses/by-nc/4.0/) which permits unrestricted reuse, distribution, and reproduction in any medium, provided the original work is properly cited.

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Figure 5. — Model rejection statistics for the HCV and bison data sets The metric is calculated for each tree (see Equation 14) under a time-aware GMRF for various combinations of its smoothing parameter and , the number of coalescent events per skyline segment. The box-plots summarize the resulting over 100 simulated trees that represent the demographic histories of the (A) Egyptian HCV and (B) Beringian bison data sets. The solid lines link the median values across boxes for a given and hence skyline dimension (). We discourage the use of skyline models with .

Inline graphic — Model rejection statistics for the HCV and bison data sets The metric is calculated for each tree (see Equation 14) under a time-aware GMRF for various combinations of its smoothing parameter and , the number of coalescent events per skyline segment. The box-plots summarize the resulting over 100 simulated trees that represent the demographic histories of the (A) Egyptian HCV and (B) Beringian bison data sets. The solid lines link the median values across boxes for a given and hence skyline dimension (). We discourage the use of skyline models with .