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. Author manuscript; available in PMC: 2023 Jan 1.
Published in final edited form as: Am J Ophthalmol. 2021 Jun 21;233:111–123. doi: 10.1016/j.ajo.2021.06.014

Table 3.

Correlation between gene association P-values computed by MAGENTA and MAGMA for top five gene sets.

Population, GWAS, Gene Window Upstream/Downstream Gene set database: Gene set Name Gene set size Pearson Correlation Coefficient Pearson p-value Spearman’ s Rank Correlation Coefficient Spearman p-value
AA, PDR Analysis, 5kb/5kb GO: REGULATION OF NITRIC OXIDE BIOSYNTHETIC PROCESS 53 0.90 8.99 X 10−18 0.93 7.49 X 10−21
AA, PDR Analysis, 5kb/5kb GO: REGULATION OF LIPID CATABOLIC PROCESS 52 0.86 4.78 X 10−16 0.86 3.03 X 10−16
AA, Extremes of DR Analysis, 110kb/40kb KEGG: APOPTOSIS 88 0.95 4.25 X 10−42 0.96 5.01 X 10−44
EU, PDR Analysis, 110kb/40kb REACTOME: LIPID DIGESTION MOBILIZATION AND TRANSPORT 46 0.86 6.28 X 10−14 0.86 6.23 X 10−14
EU, PDR Analysis, 5kb/5kb MGI: MP0008067 RETINAL GANGLION CELL DEGENERATION 16 0.93 7.35 X 10−7 0.92 7.99 X 10−7

AA = African American, EU = European, PDR = Proliferative Diabetic Retinopathy, DR = Diabetic Retinopathy