TABLE 1.
List of 28 genes with significant changes in m6A and mRNA transcript abundance in yak adipocyte as compared with preadipocytes.
Gene name | Pattern | m6A level change | mRNA level change | ||||
Peak region | Peak start | Peak end | diff.p | log2(fc) | p-value | ||
QPRT | Hyper-up | Exon | 491048 | 491299 | 0.03 | 2.30 | 0.00 |
BCL2L11 | Hyper-up | 5′ UTR | 1175002 | 1175378 | 0.03 | 2.15 | 0.04 |
PER1 | Hyper-up | 3′ UTR | 235431 | 236437 | 0.02 | 2.22 | 0.00 |
KLHL29 | Hyper-up | 3′ UTR | 4950507 | 4950957 | 0.02 | 1.44 | 0.02 |
KLF9 | Hyper-up | 5′ UTR | 1298633 | 1299052 | 0.01 | 2.18 | 0.00 |
ZNF395 | Hyper-up | 3′ UTR | 730872 | 731331 | 0.01 | 2.25 | 0.00 |
ZNF608 | Hyper-up | Exon | 980374 | 980553 | 0.04 | 2.38 | 0.00 |
MTERF4 | Hyper-up | 3′ UTR | 726115 | 726234 | 0.01 | 1.32 | 0.02 |
CD247 | Hypo-down | 3′ UTR | 33979 | 34575 | 0.01 | −1.78 | 0.02 |
SLCO5A1 | Hypo-down | Exon | 1066324 | 1066623 | 0.01 | −2.00 | 0.01 |
AFAP1L2 | Hypo-down | Exon | 854,733 | 856,548 | 0.04 | −3.48 | 0.02 |
CENPF | Hypo-down | Exon | 1363460 | 1363640 | 0.01 | −3.67 | 0.00 |
USP43 | Hypo-down | 3′ UTR | 129792 | 130001 | 0.01 | −3.08 | 0.00 |
ARHGEF28 | Hypo-down | Exon | 175098 | 178009 | 0.01 | −2.81 | 0.00 |
ARAP3 | Hypo-down | Exon | 442290 | 442350 | 0.03 | −3.53 | 0.00 |
PHF19 | Hyper-down | 3′ UTR | 273548 | 273938 | 0.00 | −1.29 | 0.04 |
ADAMTSL1 | Hyper-down | 3′ UTR | 142570 | 142929 | 0.00 | −1.99 | 0.01 |
PLD3 | Hyper-down | 3′ UTR | 118422 | 118482 | 0.01 | −1.16 | 0.05 |
CDCA8 | Hyper-down | 3′ UTR | 4260517 | 4260782 | 0.01 | −2.38 | 0.04 |
PLEKHA6 | Hyper-down | Exon | 333151 | 338353 | 0.01 | −1.76 | 0.02 |
SHANK1 | Hyper-down | Exon | 403394 | 404020 | 0.01 | −2.14 | 0.00 |
SHANK1 | Hyper-down | Exon | 406035 | 406274 | 0.01 | −2.14 | 0.00 |
CENPF | Hyper-down | Exon | 1341226 | 1357574 | 0.01 | −3.67 | 0.00 |
B4GALNT1 | Hyper-down | 3′ UTR | 320399 | 320607 | 0.01 | −2.38 | 0.04 |
TEAD4 | Hyper-down | 3′ UTR | 240855 | 242598 | 0.01 | −1.50 | 0.03 |
RHBDF2 | Hyper-down | 3′ UTR | 274815 | 275085 | 0.03 | −1.86 | 0.02 |
UHRF1 | Hyper-down | Exon | 560816 | 563952 | 0.02 | −2.62 | 0.01 |
FOXO1 | Hypo-up | 3′ UTR | 475509 | 475778 | 0.01 | 1.21 | 0.05 |
LOC102267107 | Hypo-up | 3′ UTR | 311297 | 311596 | 0.01 | 1.49 | 0.02 |