TABLE 1.

Sequencing and mapping data of 15 cDNAs isolated from the NTera2D1 library

Clone	Lengtha (bp)	Similarity to L1.2 5′UTRb	Similarity/identity to known gene or regionc	BAC clone (accession no.)	Chrd	No. of exonse	Promoter distancef (kb)
		Region (bp) %
N1	2,181	1–163 ≡ 163–2 95	171–284—Alu	AC020581	7	4	>12
			345–778—Tigger2a	AC009264
			1752–2004—MIR
			1882–2161—AA084761 (EST)
N4	1,205	10–211 ≡ 461–261 90	GAP-43 mRNA (NM_002045)	AC021376	3	4	>50
		210–324 ≡ 117–4 98	362–1205 = 122–965	AC012565
N5	1,664	1–156 ≡ 414–260 94	398–508—Alu	AC010148	NDg	4	∼1
			782–1151/1361–1664—MER4
N7	1,670	1–190 ≡ 449–260 97	192–677—Hyp protein (47%) (Q12765)	AC018470	2	5	>4
N8	762	1–326 ≡ 329–5 95	339–762—L1 (M80343)	ND	ND	ND	ND
N9	1,956	1050–1632 ≡ 769–175 81	mRNA, homologue of mouse	AL022400	1	9	ND
		1636–1771 ≡ 146–12 90	Hh1 mRNA (AL157958)	AL022171
			1–64 ≡ 913–976/63–989 ≡ 1011–1847 (99%)	AL021069
N10	1,930	1–450 ≡ 456–7 98	CHRM3 gene (U29589)	AC015901	1	5	>62
			760–1922 ≡ 183–1345	AC013517
N11	1,777	1–104 ≡ 449–346 97	103–244—FAM	AC015495	3	≥2	>15
			403–473—MIR
			1368–1777—AW513672 (EST)
N12	441	1–177 ≡ 434–259 93	SPT3 mRNA (AF073930)	AL138880	6	≥4	>40
			176–441 ≡ 173–438	AL161905
L2	∼2,000	1–109 ≡ 453–346 94	105–280/651–893/3′ end—L1	AC019310	4	ND	ND
			469–527—MIR
P1	1,687	1–194 ≡ 455–261 93	189–292—MLT	AC023485	3	≥5	>9
			1026–1326/1373–1477—MER4
P2	∼3,500	1–122 ≡ 23–142 93	5′ and 3′ ends/396–524—Alu	ND	ND	ND	ND
			275–395—Tigger1
P3	1,818	1–221 ≡ 481–261 92	361–460/488–816/876–1320/1502–1616—MLT	AC021696		>9	>7
P5	2,881	1–429 ≡ 428–1 93	OATP mRNA (U21943)	AC006559	12	16	∼60
			669–2881 ≡ 1–2213	AC022224
P6	∼3,000	3–152 ≡ 153–5 96	223–319—MLT	ND	ND	ND	ND

^aComplete and partial sequences (5′ and 3′ ends) of individual cDNAs are noted by exact and approximate sizes, respectively. 

^bSimilarity between regions of cDNA and L1.2 5′UTR (accession no. M80343) determined by BLAST2 sequences comparison and indicated by ≡ sign. 

^ccDNA sequences similar to DNA repeats or EST sequences and identical to the corresponding regions of known genes (indicated after long dashes) are shown. Accession and ESTs numbers are indicated in parentheses. 

^dChr, chromosome number determined from BAC location. 

^eDetermined from cDNA and BAC sequence comparison using BLAST2. 

^fApproximate distance of the ASP from the coding sequence is shown because of gaps and unordered fragments in unfinished BACs. 

^gND, not determined.