Skip to main content
. 2021 Dec 14;9:e12193. doi: 10.7717/peerj.12193

Table 1. The analogies between Naturally Occurring AMPs and Synthetic AMPs.

Naturally occurring AMPs Synthetic AMPs References
Sources/Origin -Found in many tissues of many different species
-Found in nearly all forms of life, and mostly reported to be isolated from eukaryotes, such as animals, plants and fungi
-Found in prokaryotic cells
-Non-natural sources
-Often created by mimicking natural sequences
(Jiang et al., 2021; Kumar, Kizhakkedathu & Straus, 2018; Nakatsuji & Gallo, 2012)
Content -Comprised of l-amino acids recognizable by proteases -The rational design of sequences comprising analogous d-amino acids substituted for l-amino acids (Da Cunha et al., 2017; Zhao et al., 2016)
Discovery methods -Using classic purification and in vitro and in vivo techniques -Combination of trial-and-error
experimentation, screening, or
computer-aided design (increasing the peptide post-translational stability without altering biological function).
(Da Cunha et al., 2017; Jiang et al., 2021)
Characteristics -Frequently susceptible to protease degradation
-Low bioavailability (i.e., presence of bioactive molecules at usually low levels).
-Low resistance to proteolytic degradation resulting in shorter half-lives
-High bioavailability
-Longer half-lives in vivo, while maintaining a similar activity and selectivity.
-Designed to improve their potential without side effects
-Incorporation of multiple functions in the same peptide sequence
(Azmi, Skwarczynski & Toth, 2016; Da Cunha et al., 2017; Jiang et al., 2021; Lei et al., 2019; Lu et al., 2020; Mahlapuu et al., 2016; Wimley, 2019)
Examples -Protegerin
-Indolicin
-Magainin 2
-Moringa oleifera chitin-binding protein (Mo-CBP)
-Iseganan (protegerin as template)
-Omiganan
(developed from indolicin)
-Pexiganan (developed from magainin 2)
-Mo-CBP3-PepIII (developed from Mo-CBP)
(Ge et al., 1999; Gottler & Ramamoorthy, 2009; Oliveira et al., 2019; Sader et al., 2004; Trotti et al., 2004)