TABLE 2.
Gene conversion, BIR, and chromosome loss following an HO-induced DSBa
Strain | Temp tested (°C) | No. tested | % Event for phenotype of colonies
|
|||||
---|---|---|---|---|---|---|---|---|
Ade+ Thr+ (GC) | Ade+ Thr+ Ade+ Thr− (GC + CO, GC + BIR) | Ade+ Thr− (BIR) | Ade+ Thr− Ade− Thr− (BIR + chrom. loss) | Ade− Thr− (chrom. loss) | Ade+ Thr+ Ade− Thr− (GC + chrom. loss) | |||
Group A | ||||||||
Wild-type YLS100 | 30 | 638 | 70.6 | 28.0 | 1.0 | 0.3 | 0 | 0.1 |
18 | 314 | 87.0 | 12.0 | 1.0 | 0 | 0 | 0 | |
rad51Δ YLS101 | 30 | 706 | 2.0 | 0 | 13.0 | 70.0 | 15.0 | 0 |
18 | 205 | 3.0 | 0 | 20.0 | 42.0 | 35.0 | 0 | |
rad54Δ YLS102 | 30 | 383 | 1.0 | 0 | 14.0 | 30.0 | 55.0 | 0 |
18 | 97 | 2.0 | 0 | 3.0 | 66.0 | 29.0 | 0 | |
rad55Δ YLS103 | 30 | 78 | 55.0 | 10.0 | 3.0 | 10.0 | 5.0 | 17.0 |
18 | 119 | 3.0 | 0 | 15.0 | 55.0 | 27.0 | 0 | |
rad57Δ YLS104 | 30 | 764 | 52.0 | 13.0 | 4.0 | 8.0 | 8.0 | 15.0 |
18 | 84 | 8.0 | 0 | 13.0 | 51.0 | 27.0 | 0 | |
rad52Δ EI524b | 30 | 3.0 | 97.0 | |||||
Group B | ||||||||
sgs1Δ JZ604 | 30 | 155 | 90.0 | 3.9 | 4.1 | 2.0 | ||
sgs1Δ rad51Δ JZ605 | 30 | 187 | 5.9 | 34.2 | 26.7 | 33.2 | ||
Group C | ||||||||
rad1Δ YLS105 | 30 | 977 | 94.7 | 4.5 | 0.8 | |||
rad1Δ rad51Δ YLS106 | 30 | 641 | 2.0 | 27.9 | 21.9 | 45.2 |
Diploid cells illustrated in Fig. 1 were plated on YEP-Gal at the temperature indicated to induce expression of HO endonuclease, and colonies were then analyzed by replica plating to assess the retention of the ADE1 and THR4 alleles marking the left and right arms of chromosome III, respectively, as shown in Fig. 1. The types of events associated with each phenotypic class are also shown. GC, gene conversion. GC + CO, a sectored colony arising by reciprocal crossing over in G2 cells. GC + BIR, a sectored colony showing both gene conversion and BIR. This category cannot be distinguished from GC + CO without further analysis. chrom. loss, chromosome loss. Sectored colonies with both gene conversion and loss (GC + chrom. loss) or BIR + chromosome loss (BIR + chrom. loss) are also indicated.
Data for rad52Δ diploid EI524 are taken from Malkova et al. (38).