Table 1.
DNA and RNA sequences used in this study
| Sequence name | Sequence (5′ → 3′) | Notes |
|---|---|---|
| VmeRepeat | GTTCACTGCCGCACAGGCAG/CTTAGAAA | RNA cleavage site indicated by/ |
| pUC spacer | gaattcgagctcggtacccggggatcctctag | pUC targeting spacer |
| pUC target | GACUcuagaggauccccggguaccgagcucgaauucAAAGAUUC | synthetic RNA target |
| N gene N57 spacera | cattctggttactgccagttgaatctgagggt | SARS-CoV-2 N gene targeting spacer |
| N gene N209 spacera | tggactgctattggtgttaattggaacgcctt | SARS-CoV-2 N gene targeting spacer |
| N gene N320 spacera | tggcccagttcctaggtagtagaaataccatc | SARS-CoV-2 N gene targeting spacer |
| N gene N719 spacera | agatttcttagtgacagtttggccttgttgtt | SARS-CoV-2 N gene targeting spacer |
| N gene N782 spacera | tgttacattgtatgctttagtggcagtacgtt | SARS-CoV-2 N gene targeting spacer |
| N gene N1169 spacera | caaatctgcagcaggaagaagagtcacagttt | SARS-CoV-2 N gene targeting spacer |
| N57 target | GUGGacccucagauucaacuggcaguaaccagaaugGAGAACGC | Synthetic RNA |
| N209 target | GGACaaggcguuccaauuaacaccaauagcaguccaGAUGACCA | Synthetic RNA |
| N209(+3) target | GGACaaggcguuccaauuaacaccaauagcaguGcaGAUGACCA | Synthetic RNA |
| N719 target | CAACaacaacaaggccaaacugucacuaagaaauctGCUGCUGA | Synthetic RNA |
| N782 target | CAAAaacguacugccacuaaagcauacaauguaacaCAAGCUUU | Synthetic RNA |
| Non-target RNA (NTR) | aggguauuauuuguuuguuucuucuaaacuauaagcuaguucuggaga | Synthetic RNA |
| NucC substrate | agtgttacattatccaccatggcgagcttt | Synthetic dsDNAb |
aThe number indicates the position of the target sequence in the SARS-CoV-2 N gene.
b5′-FAM on top strand, 3′-Iowa Black® on bottom strand.