Table 1.
RNA features, transcriptional units (TUs), PSS and TSS differentially expressed between rne(WT) and rne(Ts) and in rne(WT) upon heat treatment. RNA features include CDS, known sRNAs, asRNAs and small proteins (43–45) as well as 5′ UTRs and 3′ UTR based on the total of 4091 TUs defined by Kopf et al. (46). Numbers in parentheses give percentages relative to all features of respective type
| rne(WT) 1h/0h 39°C | rne(WT)/rne(Ts) (0h 39°C) | rne(WT)/rne(Ts) (1h 39°C) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Total | Decrease | Increase | rne(WT) | rne(Ts) | rne(WT) | rne(Ts) | |||||||
| RNA features | 6117 | 360 | (5.9%) | 302 | (4.9%) | 94 | (1.5%) | 20 | (0.3%) | 443 | (7.2%) | 433 | (7.1%) |
| TUs | 4091 | 268 | (6.6%) | 227 | (5.5%) | 78 | (1.9%) | 8 | (0.2%) | 309 | (7.6%) | 327 | (8.0%) |
| PSS | 3450 | 277 | (8.0%) | 292 | (8.5%) | 133 | (3.9%) | 35 | (1.0%) | 747 | (21.7%) | 725 | (21.0%) |
| TSS | 3540 | 336 | (9.5%) | 301 | (8.5%) | 49 | (1.4%) | 14 | (0.4%) | 228 | (6.4%) | 337 | (9.5%) |