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. 2021 Sep 28;49(22):e129. doi: 10.1093/nar/gkab829

Table 7.

Thirty-six BNLMs based on word embedding

Category Algorithm Model Description
DNA word2vec Kmer2vec Learn word representations via word2vec model (53)
RevKmer2vec
Mismatch2vec
Subsequence2vec
GloVe Kmer-GloVe Learn word representations via Glove model (54)
RevKmer-GloVe
Mismatch-GloVe
Subsequence-GloVe
fastText Kmer-fastText Learn word representations via fastText model (55)
RevKmer-fastText
Mismatch-fastText
Subsequence-fastText
RNA word2vec Kmer2vec Learn word representations via word2vec model (53)
Mismatch2vec
Subsequence2vec
GloVe Kmer-GloVe Learn word representations via Glove model (54)
Mismatch-GloVe
Subsequence-GloVe
fastText Kmer-fastText Learn word representations via fastText model (55)
Mismatch-fastText
Subsequence-fastText
Protein word2vec Kmer2vec Learn word representations via word2vec model (53)
Mismatch2vec
DR2vec
Top-n-gram2vec
DT2vec
GloVe Kmer-Glove Learn word representations via glove model (54)
Mismatch-Glove
DR-Glove
Top-n-gram-Glove
DT-Glove
fastText Kmer-fastText Learn word representations via fastText model (55)
Mismatch-fastText
DR-fastText
Top-n-gram-fastText
DT-fastText