Table 5.

Frequencies and marker prediction effects of various alleles associated with the Striga resistance-related traits.

Trait	Marker name	Allele1	Allele2	Sequence	Frequency	Adjusted probability	Adjusted significance
Grain yield	S4_164335765	AA	AC	AAAC	0.34	4.19E-01	ns
		AA	CC	AACC	0.47	4.47E-07	****
		AC	CC	ACCC	0.21	1.52E-01	ns
	Ch9_1994432	AA	GG	AAGG	1.00		***
Striga damage rating	Ch1_284192573	GG	GT	GGGT	0.42	2.46E-01	ns
		GG	TT	GGTT	0.48	1.23E-04	***
		GT	TT	GTTT	0.10	2.47E-01	ns
	Ch4_160459526	CC	TT	CCTT	1.00		**
	Ch5_5623740	AA	AC	AAAC	0.12	1.68E-01	ns
		AA	CC	AACC	0.49	5.25E-04	***
		AC	CC	ACCC	0.39	7.20E-02	ns
	Ch5_216138908	AA	CC	AACC	1.00		***
Emerged Striga plants	Ch1_298950342	AA	AG	AAAG	0.23	7.50E-02	ns
		AA	GG	AAGG	0.46	1.62E-05	****
		AG	GG	AGGG	0.31	6.10E-01	ns
	Ch3_74335447	AA	AG	AAAG	0.06	7.10E-02	ns
		AA	GG	AAGG	0.45	2.00E-03	**
		AG	GG	AGGG	0.49	2.45E-07	****
	Ch5_148751913	AA	AC	AAAC	0.36	3.29E-01	ns
		AA	CC	AACC	0.16	4.60E-02	*
		AC	CC	ACCC	0.48	4.60E-02	*
	Ch5_204969099	CC	CT	CCCT	0.13	7.04E-01	ns
		CC	TT	CCTT	0.48	4.56E-04	***
		TT	TC	TTTC	0.39	7.04E-01	ns