Table 5.
Modules of non‐metastasis group; ‘Size’ denotes the number of Affymetrix IDs in a module, whereas ‘AW’ represents the average weight within a module
| Index | Size | Gene name | AW |
|---|---|---|---|
| 1 | 13 | IGLJ3, IGKC, LOC642838, CKAP2, IGLC1, IGLV1‐44, CKAP2, IGK@, IGH@, IGHA1, IGHA2, IGHG1, IGHG2, IGHG3, IGHM, IGHV4‐31, LOC100130100, LOC100287723 | 0.88 |
| 2 | 13 | IGHM, IGH@, IGHA1, IGHA2, IGHD, IGHG1, IGHG3, IGHG4, IGHV3‐23, IGHV4‐31, IGHV4‐31, IGHG2, LOC100291917, IGK@, IGLV1‐44, IGLL5 | 0.79 |
| 3 | 7 | AEBP1, COL11A1, INHBA, LRRC15, COL10A1, COL8A2 | 0.78 |
| 4 | 5 | DCN, COL1A1, FBLN1 | 0.83 |
| 5 | 10 | C7, ABCA8, MEOX1, TNXA, TNXB, DARC, IGF1, CHRDL1, COL14A1 | 0.75 |
| 6 | 12 | NNMT, FBN1, FBLN1, PDGFRA, FBLN2, GAS1, DCN, RARRES2, DPT, CFH, SPON1 | 0.71 |
| 7 | 8 | SRGN, CTSS, LCP2, PTPRC, HLA‐DRA, HLA‐DQA1, HLA‐DQA2, LOC100507718, LOC100509457, HLA‐DRB1, HLA‐DRB3, HLA‐DRB4, LOC100507709, LOC100507714 | 0.81 |
| 8 | 10 | IGHA1, IGHA2, IGHD, IGHG1, IGHG3, IGHG4, IGHM, IGHV4‐31, IGH@, LOC100291917, LOC100653245, IGLV1‐44, IGLC1, IGLJ3, IGHV3‐48 | 0.66 |
| 9 | 6 | FHL1, FABP4, LEP, G0S2, GPD1, ITGA7 | 0.75 |
| 10 | 5 | MYH11, MYLK, LMOD1, CNN1 | 0.71 |
| 11 | 5 | TPSAB1, TPSB2 | 0.86 |
| 12 | 5 | MYL9, TAGLN, SERPINH1, CTGF, ADAM12 | 0.65 |
| 13 | 6 | CD52, CD79A, ACAP1, PTGDS, CD7, MS4A1 | 0.60 |
| 14 | 17 | P4HB, HSPD1, CALR, PSMC3, LAMP1, UBE2M, APOE, ARF1, MIR3620, TAGLN2, COL4A2, POLR2E, HSP90AB1, FARSA, ELOVL1, SH3BGRL3, ACTB, LOC100505829, GAPDH | 0.77 |
| 15 | 16 | PGRMC1, SPTLC1, TMED2, YWHAE, HSPA8, SNORD14C, SNORD14D, NOTCH2, PRPF4B, MSH6, CCNG2, NFYC, RBFOX2, ADAM10, PICALM, TMEM230 | 0.71 |
| 16 | 7 | FBN1, EMILIN1, CDH11, COL6A2, VCAN, COL6A1 | 0.70 |
| 17 | 29 | NUCB1, SHC1, CRK, PRPF31, JUND, CLDN3, TFAP2A, EIF2S3, HPCAL1, PTP4A3, CBX4, BTBD2, CRIP2, RALGDS, HMG20B, PRPF4, TSPAN4, HNRNPUL1, CDC37, AKAP1, ARPC4, TP53I11, TSC2, ENO1, MBTPS1, PTMS, INO80B, INO80B‐WBP1, EHBP1L1 | 0.65 |
| 18 | 7 | CYBA, ARRB2, RAC2, CXCR4, HLA‐G, STAT1 | 0.64 |
| 19 | 10 | SNX17, PPIF, CDYL, MED6, ABCF2, STAT3, CDC5L, WTAP, ACLY, LOC100652805, LOC100653302, PGK1 | 0.62 |
| 20 | 18 | MAT2A, BHLHE40, SLC29A1, ATP6V1A, NFYA, MPDU1, FOXO3, FOXO3B, TP53, CD46, STIP1, USP34, MTUS1, TRRAP, PLXNB1, SEC23IP, C14orf1, EXOC5, TMCO3 | 0.57 |
| 21 | 6 | MMP14, MFAP2, MMP11, BMP1, FLNA | 0.61 |
| 22 | 12 | IGLC1, IGHG1, IGHG2, IGHM, IGHV4‐31, IGK@, IGKC, GUSBP11, LOC100294406, CYAT1, IGLV1‐44, IGLL3P | 0.90 |
| 23 | 10 | LCK, CD2, GZMK, TRAC, SH2D1A, TRBC1, CD3D, CD52 | 0.88 |
| 24 | 20 | CCL5, CXCL9, ARHGAP25, PTPRCAP, POU2AF1, CD27, MAP4K1, CD3G, LTB, GPR171, PRKCB, CD247, PTPRC, PPP1R16B, ZAP70, CTSW, XCL1, XCL2 | 0.69 |
| 25 | 9 | IGHM, IGK@, IGKC, IGLJ3, IGLC1, IGLV1‐44 | 0.80 |
| 26 | 11 | CA12, FOXA1, ESR1, GATA3, TBC1D9, MLPH | 0.82 |
| 27 | 7 | SFRP1, GABRP, MIA, SOX10, SYNM | 0.78 |
| 28 | 8 | LRMP, LCK, IKZF1, CCL19, PTGDS, KLRB1, YME1L1 | 0.67 |
| 29 | 6 | PLIN1, CD36, ADIPOQ, ADH1B, RBP4 | 0.80 |
| 30 | 6 | MX1, IFI27, IFI44L, ISG15, RSAD2, IFI44 | 0.78 |
| 31 | 7 | GBP1, TAP1, CXCL10, STAT1, CXCL11 | 0.81 |
| 32 | 6 | KRT5, TRIM29, SERPINB5, JUP, KRT17, KRT6B | 0.71 |
| 33 | 7 | XBP1, SLC44A4, AGR2, AR, SPDEF, SIDT1, SPDEF | 0.71 |
| 34 | 8 | SFRP4, ITGBL1, COMP, OMD, COL10A1, MFAP5, ASPN, COPZ2 | 0.69 |
| 35 | 8 | HBB, HBA1, HBA2 | 0.87 |
| 36 | 10 | TOP2A, BIRC5, FOXM1, CDC20, NDC80, NEK2, TTK, CENPE, NCAPH, CDCA8 | 0.71 |
| 37 | 14 | RUNX3, LAMP3, CD38, ITGB7, ADAMDEC1, XCL1, NCF4, GZMB, ICOS, NKG7, LYZ, BIN2, SLAMF8, IL21R | 0.65 |
| 38 | 6 | CLDN5, CCL14, CCL14‐CCL15, CCL15, IGF1, MFAP4, SVEP1 | 0.70 |
| 39 | 10 | SIT1, CR2, HLA‐DOB, CD19, GPR18, P2RX5, IGHM, BANK1, STAP1, LRMP | 0.58 |
| 40 | 12 | CCND2, IL32, NCF1, NCF1B, NCF1C, GNLY, GABBR1, UBD, PTPN22, LAG3, CCR5, GZMH, BIRC3, KLRD1 | 0.56 |
| 41 | 5 | RARRES1, CHI3L1 | 0.77 |
‘Size’ denotes the number of Affymetrix IDs in a module, whereas ‘AW’ represents the average weight within a module