APC/Cy7 anti-mouse CD3 (17A2) |
BioLegend |
Cat# 100221; RRID:AB_2057374 |
BV-421 CD45 (30-F11) |
BioLegend |
Cat# 103133; RRID:AB_10899570 |
PE anti-mouse F4/80 (BM8) |
BioLegend |
Cat# 123109; RRID:AB_893498 |
PE anti-mouse Foxp3 (FJK-16 s) |
Invitrogen |
Cat# 12-5773-80; RRID:AB_465935 |
APC/Cy7 anti-mouse CD11b (M1/70) |
BioLegend |
Cat# 101225; RRID:AB_830641 |
PE anti-mouse CD80 (16-10A1) |
BioLegend |
Cat# 104733; RRID:AB_2563112 |
PerCP/Cy5.5 anti-mouse CTLA4 (UC10-4B9) |
BioLegend |
Cat# 106315; RRID:AB_2564473 |
APC/Cy7 anti-mouse MHCII I-A/I-E
(M5/114.15.2) |
BioLegend |
Cat# 107627; RRID:AB_1659252 |
PE anti-mouse Gr1 (RB6-8C5) |
BioLegend |
Cat# 108407; RRID:AB_313372 |
APC anti-mouse Ly6G (1A8) |
BioLegend |
Cat# 127613; RRID:AB_1877163 |
APC anti-mouse CD206 (C068C2) |
BioLegend |
Cat# 141707; RRID:AB_10896057 |
Mouse BD Fc Block (2.4G2) |
BD pharmingen |
Cat# 553142; RRID:AB_394657 |
PE mouse anti-mouse T-Bet (4B10) |
BD pharmingen |
Cat# 561265; RRID:AB_10565980 |
APC anti-mouse CD4 (GK1.5) |
BioLegend |
Cat# 100411; RRID:AB_312696 |
PE/Cy7 CD8 (53-6.7) |
BioLegend |
Cat# 100721; RRID:AB_312760 |
PerCP/Cy5.5 anti-mouse CD8 (53-6.7) |
BioLegend |
Cat# 100733; RRID:AB_2075239 |
PerCP/Cy5.5 anti-mouse CD86 (GL-1) |
BioLegend |
Cat# 105027; RRID:AB_893420 |
PerCP/Cy5.5 Ep-CAM (G8.8) |
BioLegend |
Cat# 107627; RRID:AB_1659252 |
PerCP/Cy5.5 anti-mouse PD1 (29F.1A12) |
BioLegend |
Cat# 135207; RRID:AB_10550092 |
Pe/Cy7 anti-mouse IFN-g (XMG1.2) |
BioLegend |
Cat# 505825; RRID:AB_1595591 |
PE anti-mouse CD31 (390) |
BioLegend |
Cat# 102407; RRID:AB_312902 |
Pe/Cy7 anti-mouse PDGFRa (APA5) |
BioLegend |
Cat# 135911; RRID:AB_2715973 |
PE anti-mouse CD11c (N418) |
BioLegend |
Cat# 117307; RRID:AB_313776 |
PE IgG1k isotype control |
Invitrogen |
Cat# 12-4301-81; RRID:AB_470046 |
Pe/Cy7 Rat IgG1 isotype control |
BioLegend |
Cat# 400415; RRID:AB_326521 |
InVivo rat IgG2a mAb (2A3) isotype
control |
BioXCell |
Cat# BE0089; RRID:AB_1107769 |
InVivoMAb monoclonal anti-mouse Ly6G
(1A8) |
BioXCell |
Cat# BE0075-1; RRID:AB_1107721 |
InVivoMAb CD40 rat anti-mouse IgG2a mAb
(FGK45) |
BioXCell |
Cat# BE0016-2; RRID:AB_1107647 |
InVivoMAb anti-rat Kappa Immunoglobulin Light
Chain |
BioXCell |
Cat# BE0122; RRID:AB_10951292 |
APC anti-mouse CD34 (HM34) |
BioLegend |
Cat #128611; RRID:AB_10553895 |
MPO antibody |
Santa Cruz |
Cat# sc-390109; RRID:AB_2892996 |
Neutrophil Marker (NIMP-R14) antibody |
Santa Cruz |
Cat# sc-59338; RRID:AB_2167795 |
P53 (1C12) Mouse antibody |
Cell Signaling |
Cat# 2524S; RRID:AB_331743 |
Anti-Vinculin mouse antibody |
SigmaAldrich |
Cat# V9264; RRID:AB_10603627 |
|
Bacterial and virus strains |
|
STBL3 |
ThermoFisher |
Cat# C737303 |
|
Chemicals, Peptides, and
Recombinant Proteins |
|
Nab-paclitaxel |
Celgene |
Cat# 68817-134-50 |
Gemcitabine |
Hospira |
Cat# 0409-0181-01 |
Albumin |
Sigma Aldrich |
Cat# A5843 |
Xtremegene 9 |
Roche |
Cat# 06 365 779 001 |
Polybrene |
Sigma Aldrich |
Cat# TR-1003-G |
Hygromycin |
Sigma Aldrich |
Cat# 400053 |
G418 |
Sigma Aldrich |
Cat# 345812 |
PfIFI |
New England Biolabs |
Cat# R0595S |
BsmBI |
New England Biolabs |
Cat#R0739S |
Shield-1 |
Cheminpharma |
Cat# S1-001 |
Lipofectamine 3000 |
Life Technologies |
Cat# L3000008 |
|
Critical commercial assays |
|
Surveyor DNA mutation Kit |
IDT |
Cat# 706020 |
TOPO TA Cloning Kit |
Thermo-Fisher |
Cat# K4575J10 |
SYBR Green PCR Master Mix |
Thermo-Fisher |
Cat# 4309155 |
Quantitect Reverse Transcription Kit |
QIAGEN |
Cat# 205311 |
Zombie Green Fixable Viability Kit |
Biolegend |
Cat# 423111 |
RNeasy Mini Kit |
QIAGEN |
Cat# 157029548 |
Milliplex Mouse Cytokine Magnetic Bead
Panel |
Millipore Sigma |
Cat# MCYTOMAG-70K-03 |
KAPA Mouse Genotyping Kit |
Roche |
Cat# 07961804001 |
Foxp3/Transcription Factor Staining Buffer
Set |
Invitrogen |
Cat# 00-5523-00 |
|
Experimental models: Cell
lines |
|
HEK293T |
ATCC |
Cat# ATCC® CRL-3216 |
KrasG12D/+;Trp53+/+PDEC |
Pylayeva-Gupta
et al., 2012
|
N/A |
KrasG12D/+;Trp53−/− PDEC |
This manuscript |
N/A |
KrasG12D/+;Trp53R172H/+PDEC |
This manuscript |
N/A |
|
Experimental models:
Organisms/strains |
|
C57Bl6/J mice females (6-10weeks) |
Charles River Laboratories |
CR: 632 |
|
Oligonucleotides |
p53 sgRNA, CGG AGC AGC GCT CAT GGT GG |
This manuscript |
N/A |
|
p53 HDR template, CAC CTC CAG CTG GGA GCC GTG
TCC GCG CCA TGG CCA TCT ACA AGA AGT CAC AGC ACA TGA CGG AAG TCG TGA GAC
ACT GTC CCC ACC ATG AGC GCT GCT CCG ATG GTG ATG GTA AGC CCT CAA CAC CGC
CTG TGG GGT TAG GAC TGG CAG |
This manuscript |
N/A |
p53 Forward PCR primer, TGGGA
CAGCCAAGTCTGTTA |
This manuscript |
N/A |
p53 Reverse PCR primer CCTGCT
GTCTCCAGACTCCT |
This manuscript |
N/A |
shScramble CCGGTCCTAAGGTTA
AGTCGCCCTCGCTCGAGCGAGGG CGACTTAACCTTAGGTTTT |
Sarbassov et
al., 2005
|
Addgene Cat # 1864 |
CXCL2 forward PCR primer ATGC
CTGAAGACCCTGCCAAG |
Roy et al.,
2012
|
N/A |
CXCL2 reverse PCR primer GGTC
AGTTAGCCTTGCCTTTG |
Roy et al.,
2012
|
N/A |
CXCL5 forward PCR primer ACAGT
GCCCTACGGTGGAAGT |
Roy et al.,
2012
|
N/A |
CXCL5 reverse PCR primer CGAGT
GCATTCCGCTTAGCTT |
Roy et al.,
2012
|
N/A |
|
Recombinant DNA |
|
pLKO.1 neo |
Gift from Sheila Stewart |
Addgene Cat# 13425 |
psPAX2 |
Gift from Didier Trono |
Addgene Cat# 12260 |
pMD2G |
Gift from Didier Trono |
Addgene Cat# 12259 |
pLKO.1 hygro |
Gift from Bob Weinberg |
Addgene Cat# 24150 |
LentiCRISPRv2 hygro |
Stringer et
al., 2019
|
Addgene Cat# 98291 |
conditional EDCPV |
Gift from R. Sordella, Cold Spring Harbor
Laboratory |
N/A |
|
Software and algorithms |
|
ImageJ |
Schneider et
al., 2012
|
https://imagej.nih.gov/ij/; RRID:SCR_001935 |
FlowJo version 10.2 |
FlowJo |
https://www.flowjo.com/solutions/flowjo/downloads;
RRID:SCR_008520 |
R version 3.4.3 |
RStudio |
http://www.R-project.org; RRID:SCR_000432 |
Prism Version 7 |
GraphPad |
https://www.graphpad.com/scientific-software/prism/;
RRID:SCR_002798 |
Vevo Lab |
FUJIFILM-VisualSonics |
https://www.visualsonics.com/product/software/vevo-lab
|
|
Other |
|
Whole-Tissue Gene Expression Data of
Pancreatic Ductal Adenocarcinoma |
Badea et al.,
2008
|
GSE15471 |
Expression data from Mayo Clinic Pancreatic
Tumor and Normal samples |
Pei et al.,
2009
|
GSE16515 |