REAGENT or RESOURCE | SOURCE | IDENTIFIER |
---|---|---|
Bacterial and virus strains | ||
E.coli BL21 (DE3) | Agilent | Cat#200131 |
Chemicals, peptides, and recombinant proteins | ||
eNP-2 (25-457) recombinant proteins | Leung et al., 2015; Su et al., 2018 | N/A |
uranyl acetate | Electron Microscopy Sciences | Cat#22400 |
Tobacco Etch Virus protease (TEV Protease) | New England Biolabs | Cat#P8112S |
Deposited data | ||
Cryo-EM map for eNP-2 | This Paper | https://www.ebi.ac.uk/pdbe/entry/emdb/EMD-7343 |
Flexible fitted models of eNP-2 to cryoEM map | Su et al., 2018 | N/A |
Recombinant DNA | ||
Plasmid pMBP-His6TEV eNP-2 | Leung et al., 2015; Su et al., 2018 | N/A |
Software and algorithms | ||
Origin | OriginLab | https://www.originlab.com (Version 7) |
PRISM | GraphPad | https://www.graphpad.com/ (Version 7) |
UCSF Chimera | Pettersen et al., 2004 | http://www.cgl.ucsf.edu/ |
EMAN2 | Tang et al., 2007 | http://blake.bcm.edu/emanwiki/EMAN2 |
Relion2 |
Scheres, 2012; He and Scheres., 2017 |
www2.mrc-lmb.cam.ac.uk/relion |
Motioncorr v2.1 | Li et al., 2013 | https://github.com/jianglab/motioncorr |
CTFFIND4 | Rohou and Grigorieff., 2015 | http://grigoriefflab.janelia.org/ctf |
EMAN | Ludtke et al., 1999 | http://blake.bcm.edu/emanwiki/EMAN1 |
IHRSR | Egelman, 2007 | https://cryoem.ucsd.edu/wikis/software/start.php?id=ihrsr |
Segger and ProMod plugin in UCSF Chimera |
Pintilie et al., 2010 Pintilie et al., 2016 |
https://github.com/gregdp/segger |
MassMatrix | Xu and Freitas, 2009 | http://www.massmatrix.bio/ |
HDExaminer | Sierra Analytics, Modesto, CA | http://massspec.com/hdexaminer/ |
MDFF | Trabuco et al., 2009 | http://www.ks.uiuc.edu/Research/mdff/ |
ProMod | Peitsch, 1996 | https://pypi.org/project/promod/ |
PSIPRED | McGuffin et al., 2000 | http://bioinf.cs.ucl.ac.uk/psipred/ |
Other | ||
Cu grids with continuous carbon film | Ted Pella | Cat#01754-F |
Quantifoil R 1.2/1.3 Cu grids (with continuous carbon film | Quantifoil | Cat#Q325CR1.3 |