Table 2.
Summary of processed files during analysis
| File type | Count | Description |
|---|---|---|
| FeatureCounts (.tsv) | 4615 | The read counts for annotated genes |
| Stringtie (.tsv) | 4378 | The FPKM and TPM for annotated genes |
| Differential expression (.csv) | 1950 | Differentially expression analysis results of viral infection vs. controls |
| GO/KEGG (.tsv) | 1846 | GO/KEGGs analysis results of DEGs |
| Alternative splicing (.csv) | 5465 | Alternative splicing events analysis of viral infected datasets |
| Peaks (.bed, .tsv, .txt, .png) | 2470 | Peaks calling and annotation results of protein binding data |
| Translation efficiency (.txt) | 80 | Translation efficiency of ORFs |
| Methylation (.bed.gz) | 64 | Three types of methylation value (CHG, CHH, CPG) |
| Mapping (.bw) | 10,361 | Genomic signals from mapped reads |