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. 2021 Nov 11;50(D1):D858–D866. doi: 10.1093/nar/gkab977

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© The Author(s) 2021. Published by Oxford University Press on behalf of Nucleic Acids Research.

This is an Open Access article distributed under the terms of the Creative Commons Attribution-NonCommercial License (https://creativecommons.org/licenses/by-nc/4.0/), which permits non-commercial re-use, distribution, and reproduction in any medium, provided the original work is properly cited. For commercial re-use, please contact journals.permissions@oup.com

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Figure 3. — Structural dynamics of the SARS-CoV-2 proteome. (A) SCoV2-MD is a database of time-resolved dynamics for SARS-CoV-2 proteins. (B) The user can intuitively select a simulation of interest from an interactive graphical representation of the SARS-CoV-2 virus, or (C) use our dedicated search tool. (D) The viewer module enables interactive visualization and streaming of the MD simulations. (E) For that, we provide a selection panel including quick and custom selection. (F) Our platform includes interactive analysis tools such as an interaction network displaying intermolecular and intramolecular contacts. (G) The user can also check common structural stability metrics such as RMSD and RMSF.