Table 2.
Partial and completea gene duplication and deletion rates per gene per generation for D. magna averaged across MA lines from each genotype from Germany (GA, GB, and GC), across all genotypes from Germany, and across the speciesb
| Group | Count of CNV Mutations |
Rates Including Partial and Complete Genes (95% CI) |
Rates for Completea Genes Only (95% CI) |
|||||
|---|---|---|---|---|---|---|---|---|
| Partially overlap genes | Completely overlap genes | Per gene per generation |
Per gene per generation |
|||||
| Deletion + Duplication (×10−8) | Deletion (×10−8) | Duplication (×10−8) | Both (×10−8) | Deletion (×10−8) | Duplication (×10−8) | |||
| GA | 7 | 2 | 23.21 (0, 55.47) | 16.41 (0, 44.72) | 6.79 (0, 20.38) | 5.09 (0, 11.32) | 2.83 (0, 8.49) | 2.26 (0, 6.79) |
| GB | 28 | 1 | 29.51 (0, 63.75) | 6.79 (0, 20.36) | 22.73 (0, 54.6) | 6.79 (0, 20.36) | 6.79 (0, 20.36) | 0 |
| GC | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 |
| Germany | 35 | 3 | 17.57 (4.53, 43.96) | 7.73 (0, 18.87) | 9.84 (0, 22.73) | 3.96 (0, 9.43) | 3.21 (0, 8.68) | 0.75 (0, 2.26) |
| D. magna b | 35 | 3 | 6.39 (1.1, 13.26) | 2.81 (0, 7.14) | 3.58 (0, 8.55) | 1.44 (0, 3.50) | 1.17 (0, 3.15) | 0.27 (0, 0.82) |
a
A complete gene deletion or duplications requires >95% of the gene being overlapped by a CNV mutation.
b
The species-wide estimate is the mean given the total number of MA lines in the experiment from all three populations, Germany, Finland, and Israel, even though no events were observed in MA lines derived from Finland and Israel.