Table 2. Comparison of OA Saponin Inhibitor Predicted Binding Free Energy at Site 1 and Site 2 to Those Approximated from Experimental IC50 Values.
compound | observed | observed | predicted | predicted | |
---|---|---|---|---|---|
Calc. | Site 1 | Site 2 | |||
OA saponin ID | IC50 (μM) | ΔG (kcal/mol) | ΔG (kcal/mol) | ΔG (kcal/mol) | |
1 | 12a | 18.1 | –6.47 | –9.64 | –8.64 |
2 | 12b | 5.5 | –7.17 | –9.90 | –7.61 |
3 | 12c | 8.3 | –6.93 | –9.56 | –9.20 |
4 | 12d | 10.0 | –6.82 | –9.97 | –7.82 |
5 | 12e | 6.3 | –7.09 | –10.53 | –7.10 |
6 | 12f | 4.4 | –7.31 | –10.05 | –7.82 |
7 | 12i | 5.9 | –7.13 | –9.81 | –6.38 |
8 | 12j | 7.8 | –6.97 | –9.66 | –7.90 |
9 | 12k | 5.7 | –7.15 | –10.18 | –7.42 |
10 | 12l | 6.3 | –7.09 | –10.41 | –8.41 |
11 | 12m | 9.6 | –6.84 | –9.73 | –7.35 |
12 | 12n | 16.8 | –6.51 | –9.38 | –7.13 |
13 | 12o | 7.4 | –7.00 | –10.40 | –7.20 |
14 | 12p | 13.1 | –6.66 | –9.77 | –8.70 |