Deposited data |
|
Allen Brain Observatory Neuropixels dataset |
Allen Brain Institute |
https://portal.brain-map.org/explore/circuits/visual-coding-neuropixels |
|
Experimental models: Organisms/strains |
|
Rhesus macaque (Macaca mulatta) |
German Primate Centrum, Germany & Aventis Pharma Deutschland GmbH, Germany |
NA |
Sst-IRES-Cre (SOM-IRES-Cre) mice |
The Jackson Labaratory |
Cat#013044 |
Ai32(RCL-ChR2(H134R)/EYFP) mice |
The Jackson Labaratory |
Cat#024109 |
|
Software and algorithms |
|
MATLAB (version 2020a) |
Mathworks |
https://www.mathworks.com/ |
FieldTrip |
Oostenveld et al., 2011 |
https://www.fieldtriptoolbox.org |
Reduced Rank Regression |
Semedo et al., 2019 |
https://github.com/joao-semedo/communication-subspace |
Stochastic Model of Spiking Neurons |
Wallace et al., 2011 |
https://github.com/ewallace/stochsimcode |
Python version 3.6 |
Python Software Foundation |
https://www.python.org/ |
AllenSDK pakage (version 2.3.1) |
Allen Brain Institute |
https://allensdk.readthedocs.io/en/latest/ |
Kilosort 2.5 |
Steinmetz et al., 2021 |
https://zenodo.org/record/4482749#.YSjX4I4zaUk |
Code for SSM model and E/I networks |
This manuscript |
https://zenodo.org/record/5507277 |