Table 1.
Lead variants (p-value < 1×10−6) associated with hs-cTnT and hs-cTnI
rsID | Chr | Position (hg19) | Locus | Nearest gene(s)* | Relation to gene | A1/A2 | AF | Beta (SE) | p-value | CADD |
---|---|---|---|---|---|---|---|---|---|---|
hs-cTnT (n=24,617) | ||||||||||
rs10091864 | 8 | 71359103 | 8q13.3 | NCOA2;TRAM1 | intergenic | c/g | 0.56 | −0.07(0.008) | 2.28E-19 | 0.22 |
rs9944895 | 18 | 60859974 | 18q21.33 | BCL2 | intronic | c/g | 0.69 | 0.07(0.008) | 1.05E-15 | 2.32 |
rs3737882 | 1 | 203034955 | 1q32.1 | PPFIA4 | intronic | c/g | 0.82 | 0.06(0.010) | 2.80E-09 | 12.64 |
rs28581409 | 8 | 71407059 | 8q13.3 | TRAM1 | intergenic | a/g | 0.34 | −0.05(0.008) | 6.63E-09 | 0.62 |
rs75244633 | 4 | 119879588 | 4q26 | SYNPO2 | intronic | t/c | 0.02 | 0.14(0.027) | 1.44E-07 | 4.14 |
rs146737477 | 1 | 83763281 | 1p31.1 | TTLL7 | intergenic | a/g | 0.03 | −0.25(0.047) | 1.65E-07 | 1.81 |
rs12506869 | 4 | 101000987 | 4q23 | DDIT4L | ncRNA_intronic | a/g | 0.26 | −0.05(0.009) | 2.13E-07 | 0.02 |
rs199460 | 17 | 44764775 | 17q21.31 | NSF | intronic | a/c | 0.74 | −0.05(0.010) | 3.07E-07 | 4.26 |
rs17618762 | 2 | 19846104 | 2p24.1 | LINC00954;TTC32 | intergenic | a/g | 0.93 | −0.09(0.017) | 3.37E-07 | 0.58 |
rs13341435 | 17 | 64250605 | 17q24.2 | APOH | intronic | a/g | 0.06 | 0.08(0.016) | 5.61E-07 | 3.86 |
rs1192168 | 11 | 65730945 | 11q13.1 | SART1 | intronic | t/g | 0.50 | 0.04(0.007) | 7.27E-07 | 0.18 |
rs9899998 | 17 | 29711014 | 17q11.2 | NF1;RAB11FIP4 | intergenic | a/g | 0.06 | −0.19(0.039) | 8.22E-07 | 1.22 |
rs4922982 | 11 | 22237365 | 11p14.3 | ANO5 | intronic | t/c | 0.31 | −0.04(0.009) | 9.21E-07 | 0.63 |
rs116819086 | 3 | 25449004 | 3p24.2 | RARB | intronic | c/g | 0.04 | −0.24(0.048) | 9.23E-07 | 0.10 |
hs-cTnI (n=14,336) | ||||||||||
rs7915720 | 10 | 75774139 | 10q22.2 | VCL;AP3M1 | ncRNA_intronic | a/g | 0.32 | 0.07(0.012) | 5.51E-08 | 0.63 |
rs2915700 | 7 | 38984277 | 7p14.1 | VPS41;POU6F2 | intergenic | a/g | 0.17 | 0.09(0.019) | 7.97E-07 | 1.53 |
rs26742 | 5 | 16664769 | 5p15.1 | MYO10 | downstream | a/g | 0.57 | −0.06(0.012) | 9.45E-07 | 0.71 |
Abbreviations
Chr: chromosome; AF_A1: allele frequency for allele 1; CADD: combined annotation dependent depletion score. This table presents the top 14 and 3 independent variants associated with hs-cTnT and hs-cTnI, respectively, at the significance level of p-value <1×10−6. Six studies were meta-analyzed using an inverse-variance-based fixed-effect approach. The statistics are based on the allele 1 (A1).
Nearest gene with a functional protein or RNA (e.g. anti-sense RNA) product that either overlaps with the sentinel variant, or for intergenic variants, the nearest genes up- and downstream, respectively.