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. 2021 Jul 22;16(1):247–256. doi: 10.1038/s41396-021-01056-z

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© The Author(s) 2021

Open Access This article is licensed under a Creative Commons Attribution 4.0 International License, which permits use, sharing, adaptation, distribution and reproduction in any medium or format, as long as you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made. The images or other third party material in this article are included in the article’s Creative Commons license, unless indicated otherwise in a credit line to the material. If material is not included in the article’s Creative Commons license and your intended use is not permitted by statutory regulation or exceeds the permitted use, you will need to obtain permission directly from the copyright holder. To view a copy of this license, visit http://creativecommons.org/licenses/by/4.0/.

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Fig. 2 — A Circos plot showing the synteny between the chromosome and plasmid of Vallotia and M. rhizoxinica, an endosymbiont of Rhizopus fungi. The outermost and the middle rings show genes in forward and reverse strand orientation, respectively. These include rRNA genes in red and tRNA genes in dark orange. The innermost ring indicates single-copy genes shared by M. rhizoxinica and Vallotia in black. Purple and dark yellow lines connect forward and reverse matches between the genomes, respectively. B Close up of the largest deletion on the chromosome of M. rhizoxinica and the syntenic region on the Vallotia chromosome. Genes are colored according to COG categories. Yellow: secondary metabolite biosynthesis; red: transposase; gray: unknown function; khaki: replication, recombination and repair; pink: lipid transport and metabolism; brown: protein turnover and chaperones; dark green: amino acid transport and metabolism; light green: cell envelope biogenesis; black: transcription. The figure was generated by Easyfig.