Table 1.
A partial list of computer programs implementing the MSC model with and without gene flow.
| Method | MSC | IM & MSci |
|---|---|---|
| Full likelihood | 3s | 3s |
| bpp | IMa3 | |
| *beast | G-PhoCS | |
| bpp | ||
| *beast | ||
| PhyloNet | ||
| Two step | astral | PhyloNet |
| mp-est | PhyloNetworks | |
| NJ-st |
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