Computed values of rupture force and pulling work in comparison with experimental data of ligands to SARS-CoV-2 Mpro.
No. | Name | F Monomer | W Monomer | F Dimer | W Dimer | ΔGEXPa |
---|---|---|---|---|---|---|
1 | 7j | 575.3 ± 32.3 | 57.9 ± 3.9 | 583.6 ± 33.8 | 60.5 ± 4.2 | −8.69 |
2 | 11a | 761.0 ± 27.0 | 73.8 ± 3.3 | 860.2 ± 31.3 | 95.7 ± 3.9 | −9.96 |
3 | 11b | 735.4 ± 40.5 | 74.2 ± 3.9 | 814.0 ± 52.5 | 80.7 ± 4.9 | −10.13 |
4 | 11r | 724.8 ± 57.7 | 77.6 ± 7.1 | 636.6 ± 28.2 | 71.5 ± 2.9 | −9.23 |
5 | 13a | 526.9 ± 56.4 | 54.4 ± 7.3 | 769.6 ± 16.3 | 84.7 ± 3.2 | −7.70 |
6 | 13b | 977.6 ± 33.7 | 106.1 ± 4.6 | 739.1 ± 28.4 | 81.6 ± 3.0 | −8.45 |
7 | Calpain inhibitor I | 625.0 ± 26.3 | 57.9 ± 2.7 | 683.2 ± 34.1 | 63.4 ± 2.5 | −6.94 |
8 | Calpain inhibitor II | 592.5 ± 31.5 | 54.4 ± 3.5 | 497.4 ± 29.1 | 44.6 ± 4.3 | −8.23 |
9 | Calpain inhibitor XII | 491.6 ± 20.5 | 46.0 ± 2.3 | 693.6 ± 50.7 | 63.5 ± 4.8 | −8.69 |
10 | Calpeptin | 446.8 ± 16.9 | 33.4 ± 2.2 | 662.7 ± 32.5 | 62.5 ± 3.6 | −6.81 |
11 | Candesartan cilexetil | 547.2 ± 38.0 | 51.4 ± 5.3 | 510.7 ± 39.3 | 49.7 ± 3.4 | −7.60 |
12 | Carmofur | 485.5 ± 34.2 | 36.2 ± 2.7 | 436.9 ± 16.3 | 33.6 ± 1.8 | −7.86 |
13 | Chloroquine | 363.4 ± 32.1 | 28.5 ± 2.8 | 410.9 ± 12.5 | 36.0 ± 1.6 | −7.41 |
14 | Dipyridamole | 547.2 ± 38.0 | 51.4 ± 5.3 | 507.5 ± 18.7 | 51.0 ± 2.4 | −8.52 |
15 | Disulfiram | 364.7 ± 24.7 | 22.7 ± 1.9 | 526.2 ± 30.3 | 40.1 ± 1.9 | −6.89 |
16 | GC-373 | 616.9 ± 34.0 | 58.2 ± 4.4 | 557.3 ± 39.9 | 52.0 ± 5.2 | −8.76 |
17 | Hydroxychloroquine | 392.0 ± 27.2 | 30.2 ± 3.1 | 307.7 ± 24.9 | 22.4 ± 2.9 | −7.58 |
18 | MG-115 | 564.8 ± 26.4 | 56.6 ± 2.5 | 708.8 ± 31.1 | 70.6 ± 3.5 | −7.53 |
19 | MG-132 | 543.2 ± 22.2 | 49.8 ± 2.1 | 505.7 ± 41.1 | 47.5 ± 6.0 | −7.41 |
20 | Narlaprevir | 601.8 ± 31.9 | 64.8 ± 2.8 | 522.0 ± 38.3 | 54.7 ± 4.3 | −7.18 |
21 | Omeprazole | 478.6 ± 24.0 | 38.1 ± 2.2 | 413.3 ± 33.1 | 31.7 ± 3.2 | −6.40 |
22 | Oxytetracycline | 447.2 ± 21.6 | 37.0 ± 2.9 | 432.4 ± 49.6 | 37.7 ± 4.8 | −6.60 |
23 | PX-12 | 295.0 ± 17.4 | 13.7 ± 1.2 | 382.0 ± 25.5 | 27.2 ± 2.0 | −6.39 |
24 | Shikonin | 321.8 ± 29.7 | 19.7 ± 3.0 | 504.5 ± 22.8 | 39.1 ± 1.2 | −6.58 |
The experimental binding free energies were gained based on IC50 value,12–18 approximating that the one equals to the inhibition constant ki. The unit of force and energy/work are in pN and kcal mol−1, respectively.