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. 2021 Jan 13;11(5):2926–2934. doi: 10.1039/d0ra09858b

Computed values of rupture force and pulling work in comparison with experimental data of ligands to SARS-CoV-2 Mpro.

No. Name F Monomer W Monomer F Dimer W Dimer ΔGEXPa
1 7j 575.3 ± 32.3 57.9 ± 3.9 583.6 ± 33.8 60.5 ± 4.2 −8.69
2 11a 761.0 ± 27.0 73.8 ± 3.3 860.2 ± 31.3 95.7 ± 3.9 −9.96
3 11b 735.4 ± 40.5 74.2 ± 3.9 814.0 ± 52.5 80.7 ± 4.9 −10.13
4 11r 724.8 ± 57.7 77.6 ± 7.1 636.6 ± 28.2 71.5 ± 2.9 −9.23
5 13a 526.9 ± 56.4 54.4 ± 7.3 769.6 ± 16.3 84.7 ± 3.2 −7.70
6 13b 977.6 ± 33.7 106.1 ± 4.6 739.1 ± 28.4 81.6 ± 3.0 −8.45
7 Calpain inhibitor I 625.0 ± 26.3 57.9 ± 2.7 683.2 ± 34.1 63.4 ± 2.5 −6.94
8 Calpain inhibitor II 592.5 ± 31.5 54.4 ± 3.5 497.4 ± 29.1 44.6 ± 4.3 −8.23
9 Calpain inhibitor XII 491.6 ± 20.5 46.0 ± 2.3 693.6 ± 50.7 63.5 ± 4.8 −8.69
10 Calpeptin 446.8 ± 16.9 33.4 ± 2.2 662.7 ± 32.5 62.5 ± 3.6 −6.81
11 Candesartan cilexetil 547.2 ± 38.0 51.4 ± 5.3 510.7 ± 39.3 49.7 ± 3.4 −7.60
12 Carmofur 485.5 ± 34.2 36.2 ± 2.7 436.9 ± 16.3 33.6 ± 1.8 −7.86
13 Chloroquine 363.4 ± 32.1 28.5 ± 2.8 410.9 ± 12.5 36.0 ± 1.6 −7.41
14 Dipyridamole 547.2 ± 38.0 51.4 ± 5.3 507.5 ± 18.7 51.0 ± 2.4 −8.52
15 Disulfiram 364.7 ± 24.7 22.7 ± 1.9 526.2 ± 30.3 40.1 ± 1.9 −6.89
16 GC-373 616.9 ± 34.0 58.2 ± 4.4 557.3 ± 39.9 52.0 ± 5.2 −8.76
17 Hydroxychloroquine 392.0 ± 27.2 30.2 ± 3.1 307.7 ± 24.9 22.4 ± 2.9 −7.58
18 MG-115 564.8 ± 26.4 56.6 ± 2.5 708.8 ± 31.1 70.6 ± 3.5 −7.53
19 MG-132 543.2 ± 22.2 49.8 ± 2.1 505.7 ± 41.1 47.5 ± 6.0 −7.41
20 Narlaprevir 601.8 ± 31.9 64.8 ± 2.8 522.0 ± 38.3 54.7 ± 4.3 −7.18
21 Omeprazole 478.6 ± 24.0 38.1 ± 2.2 413.3 ± 33.1 31.7 ± 3.2 −6.40
22 Oxytetracycline 447.2 ± 21.6 37.0 ± 2.9 432.4 ± 49.6 37.7 ± 4.8 −6.60
23 PX-12 295.0 ± 17.4 13.7 ± 1.2 382.0 ± 25.5 27.2 ± 2.0 −6.39
24 Shikonin 321.8 ± 29.7 19.7 ± 3.0 504.5 ± 22.8 39.1 ± 1.2 −6.58
a

The experimental binding free energies were gained based on IC50 value,12–18 approximating that the one equals to the inhibition constant ki. The unit of force and energy/work are in pN and kcal mol−1, respectively.