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. 2021 Jan 20;11(7):3897–3916. doi: 10.1039/d0ra08905b

Binding characteristics of synthesized compounds (8a–8g and 9a–9d) and references against DNA gyrase A protein.

Com. BE Binding interaction Bond length(Å) Bond angle (°) Bond type
Streptomycin −6.9 Arg 139 CG⋯HN 2.2 124.4 H–don
Leu 135 CD⋯HN 2.7 125.7 H–don
His 132 CB⋯OH 2.5 125.0 H–acc
Asp 53 CG⋯OC 3.4 116.7 H–acc
Asp 53 OC⋯OC 2.9 118.9 H–acc
Asp 58 OD⋯OH 2.0 118.6 H–acc
Asp 58 OD⋯HN 2.5 116.4 H–don
His 132 ND⋯OC 2.8 126.2 H–acc
His 132 ND⋯OC 2.7 120.0 H–acc
His 132 OC⋯OH 2.5 119.8 H–acc
Norfloxacin –7.3. Leu 264 CA⋯OC 2.0 114.7 H–acc
8a –6.0 Tyr 266 CZ⋯HN 2.2 119.9 H–don
Thr 171 CA⋯HO 2.2 114.6 H–don
Asn 169 OC⋯HN 2.5 120.7 H–don
8b −8.2 Ser 111 CA⋯ OC 2.3 122.5 H–acc
Arg 91 CZ⋯ OS 2.2 119.0 H–acc
Asn 169 OC⋯HN 2.2 118.4 H–acc
8c −8.1 Arg 47 CZ⋯OS 2.3 119.4 H–acc
Arg 47 NE⋯OC 2.2 116.2 H–acc
Arg 47 NE⋯OC 2.6 118.9 H–acc
Arg 47 CZ⋯OC 2.3 120.4 H–acc
Tyr 77 CA⋯HO 2.6 118.7 H–don
Tyr 77 CA⋯HN 2.2 122.0 H–don
8d −8.0 Gln 94 CD⋯OH 2.2 124.1 H–acc
Gln 94 CD⋯OC 2.0 118.4 H–acc
Arg 91 CZ⋯OC 2.6 119.1 H–acc
8e −8.5 Arg 91 CZ⋯ON 2.3 121.8 H–acc
Gln 267 CA⋯ON 2.7 114.3 H–acc
Gin 94 CD⋯OC 2.2 118.4 H–acc
Asp115 CA⋯HO 2.3 124.2 H–don
Ser 111 CG⋯HO 2.4 122.5 H–don
Ser 111 OC⋯HN 2.1 123.1 H–don
Asg 269 HD⋯OS 2.7 120.3 H–acc
8f −8.4 Arg 91 CZ⋯OC 2.9 120.8 H–acc
Arg 91 CZ⋯OC 2.3 119.0 H–acc
Asn 269 CG⋯OS 2.4 122.3 H–acc
8g −8.8 Arg 91 CZ⋯OS 2.1 119.0 H–acc
Arg 91 CZ⋯OS 2.8 121.8 H–acc
Gln 94 CD⋯OC 2.3 118.4 H–acc
Ser 111 HN⋯OC 2.2 116.0 H–acc
Asp 115 CA⋯HO 1.7 120.6 H–don
9a −8.3 Gly 114 CA⋯OS 2.8 112.3 H–acc
Ser 111 OC⋯HO 2.3 120.4 H–don
Ser 111 HN⋯OC 2.4 122.5 H–acc
Gln 94 CD⋯OC 2.3 118.4 H–acc
9b −6.5 Met 301 CA⋯OC 2.1 115.2 H–acc
His 262 CA⋯HN 2.1 121.2 H–don
Leu 264 CA⋯OC 2.1 114.7 H–acc
Thr 219 CA⋯HO 2.0 119.9 H–don
9c −6.5 Met 301 HN⋯OC 2.3 115.2 H–acc
Leu 264 HN⋯OC 2.1 114.7 H–acc
9d −6.6 Arg 91 CZ⋯OC 2.5 119.0 H–acc
Arg 91 CZ⋯OC 2.7 119.0 H–acc
Gln 94 NE⋯OC 2.1 118.4 H–acc
Ser 111 CA⋯OC 2.3 116.2 H–acc
Ser 111 CA⋯HO 2.2 120.4 H–don