Binding characteristics of synthesized compounds (8a–8g and 9a–9d) and references against DNA gyrase A protein.
| Com. | BE | Binding interaction | Bond length(Å) | Bond angle (°) | Bond type |
|---|---|---|---|---|---|
| Streptomycin | −6.9 | Arg 139 CG⋯HN | 2.2 | 124.4 | H–don |
| Leu 135 CD⋯HN | 2.7 | 125.7 | H–don | ||
| His 132 CB⋯OH | 2.5 | 125.0 | H–acc | ||
| Asp 53 CG⋯OC | 3.4 | 116.7 | H–acc | ||
| Asp 53 OC⋯OC | 2.9 | 118.9 | H–acc | ||
| Asp 58 OD⋯OH | 2.0 | 118.6 | H–acc | ||
| Asp 58 OD⋯HN | 2.5 | 116.4 | H–don | ||
| His 132 ND⋯OC | 2.8 | 126.2 | H–acc | ||
| His 132 ND⋯OC | 2.7 | 120.0 | H–acc | ||
| His 132 OC⋯OH | 2.5 | 119.8 | H–acc | ||
| Norfloxacin | –7.3. | Leu 264 CA⋯OC | 2.0 | 114.7 | H–acc |
| 8a | –6.0 | Tyr 266 CZ⋯HN | 2.2 | 119.9 | H–don |
| Thr 171 CA⋯HO | 2.2 | 114.6 | H–don | ||
| Asn 169 OC⋯HN | 2.5 | 120.7 | H–don | ||
| 8b | −8.2 | Ser 111 CA⋯ OC | 2.3 | 122.5 | H–acc |
| Arg 91 CZ⋯ OS | 2.2 | 119.0 | H–acc | ||
| Asn 169 OC⋯HN | 2.2 | 118.4 | H–acc | ||
| 8c | −8.1 | Arg 47 CZ⋯OS | 2.3 | 119.4 | H–acc |
| Arg 47 NE⋯OC | 2.2 | 116.2 | H–acc | ||
| Arg 47 NE⋯OC | 2.6 | 118.9 | H–acc | ||
| Arg 47 CZ⋯OC | 2.3 | 120.4 | H–acc | ||
| Tyr 77 CA⋯HO | 2.6 | 118.7 | H–don | ||
| Tyr 77 CA⋯HN | 2.2 | 122.0 | H–don | ||
| 8d | −8.0 | Gln 94 CD⋯OH | 2.2 | 124.1 | H–acc |
| Gln 94 CD⋯OC | 2.0 | 118.4 | H–acc | ||
| Arg 91 CZ⋯OC | 2.6 | 119.1 | H–acc | ||
| 8e | −8.5 | Arg 91 CZ⋯ON | 2.3 | 121.8 | H–acc |
| Gln 267 CA⋯ON | 2.7 | 114.3 | H–acc | ||
| Gin 94 CD⋯OC | 2.2 | 118.4 | H–acc | ||
| Asp115 CA⋯HO | 2.3 | 124.2 | H–don | ||
| Ser 111 CG⋯HO | 2.4 | 122.5 | H–don | ||
| Ser 111 OC⋯HN | 2.1 | 123.1 | H–don | ||
| Asg 269 HD⋯OS | 2.7 | 120.3 | H–acc | ||
| 8f | −8.4 | Arg 91 CZ⋯OC | 2.9 | 120.8 | H–acc |
| Arg 91 CZ⋯OC | 2.3 | 119.0 | H–acc | ||
| Asn 269 CG⋯OS | 2.4 | 122.3 | H–acc | ||
| 8g | −8.8 | Arg 91 CZ⋯OS | 2.1 | 119.0 | H–acc |
| Arg 91 CZ⋯OS | 2.8 | 121.8 | H–acc | ||
| Gln 94 CD⋯OC | 2.3 | 118.4 | H–acc | ||
| Ser 111 HN⋯OC | 2.2 | 116.0 | H–acc | ||
| Asp 115 CA⋯HO | 1.7 | 120.6 | H–don | ||
| 9a | −8.3 | Gly 114 CA⋯OS | 2.8 | 112.3 | H–acc |
| Ser 111 OC⋯HO | 2.3 | 120.4 | H–don | ||
| Ser 111 HN⋯OC | 2.4 | 122.5 | H–acc | ||
| Gln 94 CD⋯OC | 2.3 | 118.4 | H–acc | ||
| 9b | −6.5 | Met 301 CA⋯OC | 2.1 | 115.2 | H–acc |
| His 262 CA⋯HN | 2.1 | 121.2 | H–don | ||
| Leu 264 CA⋯OC | 2.1 | 114.7 | H–acc | ||
| Thr 219 CA⋯HO | 2.0 | 119.9 | H–don | ||
| 9c | −6.5 | Met 301 HN⋯OC | 2.3 | 115.2 | H–acc |
| Leu 264 HN⋯OC | 2.1 | 114.7 | H–acc | ||
| 9d | −6.6 | Arg 91 CZ⋯OC | 2.5 | 119.0 | H–acc |
| Arg 91 CZ⋯OC | 2.7 | 119.0 | H–acc | ||
| Gln 94 NE⋯OC | 2.1 | 118.4 | H–acc | ||
| Ser 111 CA⋯OC | 2.3 | 116.2 | H–acc | ||
| Ser 111 CA⋯HO | 2.2 | 120.4 | H–don |