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. 2021 Dec 23;27(5):1411–1419. doi: 10.1016/j.drudis.2021.12.017

Table 1.

Summary of the DFT XC functionals in recent (2020–2021) COVID-19 molecular modeling studies.a, b

Functional Type χc Exchange functional Correlation functional DC class Description Selected basis sets in study Refs
PBE LDA Not used in studies reviewed
GGA 0 PBE PBE None Used to study inactivation mechanism
Good at predicting solid-state properties
Inaccurate in determining atomization energies and reaction barriers for molecular reactions.
Not mentioned 35., 36., 41.
Meta-GGA Not used in studies reviewed
B3LYP Hybrid GGA 20 B88 Lee-Yang-Parr (LYP) None Widely used for many different types of ligand because of its relatively high accuracy and low cost; B3LYP is more suitable for main-group elements than for transition metals 6-31G, 6-31G*
6-311G(d,p)
6-311G*
LANL2DZ
def2-SVP
14., 15., 18., 20., 25., 32., 33., 37., 42.
B3PW91 20 B88 Perdew-Wang91 None B3PW91 is similar to B3LYP; performs better for systems with uniform density 6-311++G** 36., 43.
PBE0 25 PBE PBE None PBE0 is PBE functional with a 25% HF exchange functional; used to study inactivation mechanisms through covalent binding 6-31G*
6-311++G**
43., 44
PBE0-D3 25 PBE PBE III PBE0-D3 is PBE0 with semiclassical correction on dispersion; describes thermochemistry better with low numerical complexity; dispersion correction does not affect density expression of system; used to study enzyme–substrate complex dynamical properties 6-31G** 39., 45.
M06-2X Hybrid meta-GGA 54 M06-2X M06-2X II Performs well in determining main-group thermochemical properties, noncovalent interactions, and barrier heights; however, not suitable for transition metal chemistry 6-311(d,p) 29, 37.
ωB97X-D RSH GGA 22, 100d Becke97 Becke97 III Performs well for bonded interactions and barrier heights def2-TZVP
6-31+G(d,p)
21., 36., 43.
a

The types of XC functional are sorted by their levels of accuracy and computational complexity from low (top rows) to high (bottom rows). Some information is from35., 36., 37., 39., 46..

b

Abbreviations: DC Class, Dispersion-Correction Class (defined in39GGA, generalized gradient approximation; GH, global hybrid; RSH, range-separation hybrid.

c

χ: magnitude of the percentage of HF exchange functional in the total exchange functional part.

d

20 for short range exchange functional and 100 for long range exchange functional.