KEY RESOURCES TABLE
| REAGENT or RESOURCE | SOURCE | IDENTIFIER |
|---|---|---|
| Bacterial and virus strains | ||
| pENN.AAV1.CamKII.GCaMP6f.WPRE.SV40 | Addgene | Cat# 100834-AAV1; RRID: Addgene_100834 |
| pENN.AAV1.CaMKIIa.eNpHR.3.0.EYFP | Addgene | Cat# 26791-AAV1; RRID: Addgene_26971 |
| pENN.AAV1.CamKII(1.3).eYFP.WPRE.hGH | Addgene | Cat# 105622-AAV1; RRID: Addgene_105622 |
| Chemicals, peptides, and recombinant proteins | ||
| Mycobacterium tuberculosis: Complete Freund’s Adjuvant | Sigma-Aldrich | Cat# F5881-10ML |
| Ketamine hydrochloride | Zoetis | N/A |
| D-(−)-2-Amino-5-phosphonopentanoic acid | Abcam | Cat# ab144482 |
| Rapamycin | Sigma-Aldrich | Cat# R0395-1MG |
| Experimental models: organisms/strains | ||
| Sprague-Dawley | Taconic Farms | Model SD |
| Software and algorithms | ||
| MATLAB R2019a | MathWorks | https://www.mathworks.com/products/MATLAB.html |
| GraphPad Prism 8 | GraphPad Software | https://www.graphpad.com/scientific-software/prism/ |
| Inscopix Data Acquisition Software | Inscopix | https://www.inscopix.com/software-analysis#software_idas |
| Inscopix Data Processing Software | Inscopix | https://www.inscopix.com/software-analysis#software_idps |
| Constrained Nonnegative Matrix Factorization for microEndoscopic data | Open source | https://github.com/zhoupc/CNMF_E; https://doi.org/10.7554/eLife.28728.001 |
| CellReg | Open source | https://github.com/zivlab/CellReg; Sheintuch et al., 2017 |
| OASIS | Open source | https://github.com/zhoupc/OASIS_matlab; Friedrich et al., 2017 |
| Gephi | Open source | https://gephi.org/ |
| Custom code | This paper | https://doi.org/10.5281/zenodo.5570672 |
| Other | ||
| nVoke 2.0 | Inscopix | https://www.inscopix.com/nvoke |
| Gradient-index lens | Inscopix | https://www.inscopix.com/lenses-viruses |
| Kwik-Sil Silicone Elastomer | World Precision Instruments | Code KWIK-SIL |
| Ceramic ferrules | Thorlabs | Cat# CFLC126-10 |
| Compact Power and Energy Meter Console, Digital “4 LCD | Thorlabs | Cat# PM100D |
| Transistor-transistor logic pulse generator | Doric Lenses | Code OTPG_4 |
| Metabond Quick Adhesive Cement System | C&B | Cat# S380 |
| Fluoromount Aqueous Mounting Medium | Sigma-Aldrich | Cat# F4680-25ML |
| HC-V550 Camcorder | Panasonic | https://www.panasonic.com/middleeast/en/support/product-archive/camcorder/hc-v550.html |