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. 2021 Dec 7;6(50):34823–34831. doi: 10.1021/acsomega.1c05440

Table 1. Comparisons of pKa Values by DeepKa, CpHMD Simulations, PropKa, and Experiments.

res MAE RMSD max R m
DeepKa vs experiment
All 0.81 1.05 3.27 0.69 0.42
Asp 0.79 1.08 2.91 0.74 0.42
Glu 0.94 1.15 3.27 0.54 0.31
His 0.78 1.01 3.15 0.63 0.42
Lys 0.63 0.84 2.71 0.84 0.59
CpHMD vs experiment
All 0.74 1.02 4.27 0.73 0.65
Asp 0.93 1.24 4.27 0.67 0.54
Glu 0.78 1.06 2.94 0.62 0.50
His 0.57 0.80 2.49 0.80 0.77
Lys 0.53 0.72 2.35 0.89 0.91
DeepKa vs CpHMD
All 0.58 0.79 2.55 0.79 0.54
Asp 0.61 0.82 2.55 0.79 0.56
Glu 0.57 0.82 2.30 0.66 0.46
His 0.66 0.83 2.11 0.72 0.49
Lys 0.45 0.66 2.31 0.94 0.65
PropKa vs experiment
All 0.87 1.12 3.66 0.63 0.45
Asp 0.80 1.05 2.96 0.75 0.47
Glu 0.76 1.06 3.66 0.69 0.65
His 1.20 1.44 3.47 0.19 0.08
Lys 0.81 0.95 2.00 0.80 0.50