Table 1. Comparisons of pKa Values by DeepKa, CpHMD Simulations, PropKa, and Experiments.
res | MAE | RMSD | max | R | m |
---|---|---|---|---|---|
DeepKa vs experiment | |||||
All | 0.81 | 1.05 | 3.27 | 0.69 | 0.42 |
Asp | 0.79 | 1.08 | 2.91 | 0.74 | 0.42 |
Glu | 0.94 | 1.15 | 3.27 | 0.54 | 0.31 |
His | 0.78 | 1.01 | 3.15 | 0.63 | 0.42 |
Lys | 0.63 | 0.84 | 2.71 | 0.84 | 0.59 |
CpHMD vs experiment | |||||
All | 0.74 | 1.02 | 4.27 | 0.73 | 0.65 |
Asp | 0.93 | 1.24 | 4.27 | 0.67 | 0.54 |
Glu | 0.78 | 1.06 | 2.94 | 0.62 | 0.50 |
His | 0.57 | 0.80 | 2.49 | 0.80 | 0.77 |
Lys | 0.53 | 0.72 | 2.35 | 0.89 | 0.91 |
DeepKa vs CpHMD | |||||
All | 0.58 | 0.79 | 2.55 | 0.79 | 0.54 |
Asp | 0.61 | 0.82 | 2.55 | 0.79 | 0.56 |
Glu | 0.57 | 0.82 | 2.30 | 0.66 | 0.46 |
His | 0.66 | 0.83 | 2.11 | 0.72 | 0.49 |
Lys | 0.45 | 0.66 | 2.31 | 0.94 | 0.65 |
PropKa vs experiment | |||||
All | 0.87 | 1.12 | 3.66 | 0.63 | 0.45 |
Asp | 0.80 | 1.05 | 2.96 | 0.75 | 0.47 |
Glu | 0.76 | 1.06 | 3.66 | 0.69 | 0.65 |
His | 1.20 | 1.44 | 3.47 | 0.19 | 0.08 |
Lys | 0.81 | 0.95 | 2.00 | 0.80 | 0.50 |