AA	amino acid
ADA	Adenosine deaminase
AKT	three serine/threonine-specific protein kinases
ALG-2	apoptosis-linked gene-2 protein
ALR	aumiddlehagic lysosome reformation
ALSAM2	amyotrophic lateral sclerosisM2 proton channel, influenza virus A
AMPK	AMP-activated protein kinase
Arl8	Arf like protein 8
ATF6	activating transcription factor 6
Atg	aumiddlehagy genes
ATP	adenosine triphosphate
CaM	calmodulin
CAMKKβ	Ca2+/calmodulin dependent protein kinase kinase-beta
CaN	calcineurin
CAPS1/CADPS	calcium dependent activator protein for secretion
Cav2.2	(N-type) voltage-gated Ca2+ channels
CFTR	cystic fibrosis transmembrane conductance regulator
ChT	chloramine T
CLA	clarithromycin
CPP	calcium phosphate precipitate
DENV2	dengue-virus, strain 2
DEPTOR	DEP- domain-containing mTOR- interacting protein
DFCP1	double FYVe domain-containing protein 1
EDME	estradiol methyl ether
ENT3	equilibrative nucleoside transporter 3
ER	endoplasmic reticulum
ERK1/2	extracellular signal-regulated protein kinase
F-ATPase	F-type ATPase/ATP synthase
FIP200	FAK family–interacting protein of 200 kD
FOXO3	forkhead box protein O3
GRP75	glucose-regulated protein 75
GTPase	guanosine triphosphate enzyme
H2O2	hydrogen peroxide
hERG1	Ether-A-Go-Go-Related Gene Potassium Channel 1
HOPS	homotypic fusion and vacuole protein sorting
IP3R	inositol trisphosphate receptor
IRE1	inositol-requiring enzyme 1
JNK	c-Jun N-terminal kinases
KEL	K+-selective channel
KO	knockout
Kv11.3	pore-forming (alpha) subunit of voltage-gated potassium channel
L-BMAA	neurotoxin β-N-methylamino-L-alanine
LC3	microtubule-associated light chain-3
LPS	lipopolysaccharide
mASMs	mouse aortic smooth muscle cells
MCOLN1	mucolipin-1
ML-SA1	mucolipin specific agonist, 1
ML2-SA	mucolipin2 specific agonist
MLIV	mucolipidosis type IV
mLST8	mammalian lethal with SEC13 protein 8
MTMRs	myotubularin-related proteins
mTOR	mechanistic target of rapamycin
mtROS	mitochondrial reactive oxygen species
NAADP	nicotinic acid adenine dinucleotide phosphate
NH4Cl	ammonium chloride
ORAI1	calcium release-activated calcium channel protein 1
p38	mitogen-activated protein kinase p38 beta
p62	sequestosome-1
PE	phosphatidylethanolamine
PERK	protein kinase (PKR)-like ER kinase
PI(3,5)P2	phosphatidylinositol 3,5-bisphosphate
PI3K-III	class III phosphatidylinositol 3-kinase complex
PI3P	phosphatidylinositol 3-phosphate
PIKFYVE	phosphoinositide kinase, FYVE-Type Zinc Finger Containing
PRAS40	raptor recruits proline-rich AKT substrate 40 kDa
PROTOR1/2	protein associated with rictor 1 or 2
PSEN2	presenilin 2
Rab7	Ras-related protein7
Raptor	regulatory-associated protein of mTOR
RAVE	regulator of ATPase of vacuoles and endosomes
Rbcn	rabconnectins
ROS	reactive oxygen species
RYR	ryanodine receptor
SCID	severe combined immunodeficiency
SERCA	sarco/endoplasmic reticulum calcium ATPase
SM	sphingomyelin
SMase	sphingomelinase
SNAP25	synaptosomal-associated protein 25
SNAP29	synaptosomal-associated protein 29
SNARE	soluble N-ethylmaleimide-sensitive factor attachment protein receptor
SOCC	store-operated calcium channels
SOCE	store-operated Ca2+ entry
STIM1	stromal interaction molecule 1 precursor
TBHP	t-butyl hydroperoxide
TFEB	transcription factor EB
TG	thapsigargin
TMBIM6	transmembrane Bax inhibitor motif-containing 6
TMEM175	transmembrane protein 175
TOM70	component of the TOM (translocase of outer membrane) complex
TPC2	two pore channel 2
CAX2	vacuolar cation/proton exchanger 2
TRPM2	transient receptor potential cation channel subfamily M member 2
TRPML	transient receptor potential mucolipin channel
TSC2	tuberous sclerosis complex-2/tuberin
ULK1	unc-51 like aumiddlehagy activating kinase 1
V-ATPase	vacuolar-ATPase
VacA	vacuolating toxin a
VAMP2	synaptobrevin-2/ vesicle-associated membrane protein 2
VAMP7	vesicle-associated membrane protein 7
VAMP8	vesicle-associated membrane protein 8
VDAC1	voltage-dependent anion-selective channel protein 1
VhaAC39-1	Drosophila melanogaster vacuolar H+ ATPase AC39 subunit 1
VMP1	vacuolar membrane protein-1
VPS3	vacuolar protein sorting 34
ZIKV	Zika-virus