| C | Species concentration, cells.m−3 |
| D | Binary diffusion coefficient, m2.s−1 |
| D 0 | Scaling Factor, m2.s−1 |
| k 1 | Kinetic rate constant for infection, cells−1.m3s−1 |
| k 2 | Kinetic rate constant for virus propagation, s−1 |
| k 3 | Kinetic rate constant for virus clearance, s−1 |
| k 4 | Kinetic rate constant for cells accumulation, cells−1.m3s−1 |
| L 0 | Pharynx length, m |
| t | Time, s |
| u 1 | Virus concentration, dimensionless |
| ui 0 | Initial virus concentration, dimensionless |
| v 0 | Convective flow velocity, m.s−1 |
| X 1 | Ratio of infected cells to initial cells |
| X 2 | Degree of conversion of uninfected cells to infected cells |
| Y | Yield of virus per infected cell |
| z | Axial coordinate, m |
| Greek Letters | |
| η | Dimensionless length |
| τ | Dimensionless time |
| Subscript | |
| 0 | Initial Conditions |
| infc | Infected cells |
| sub Substrate | |
| unc | Uninfected cells |
| vir | Virus |