Table 5.
Summary of the number and proportion of called SNPs after capture of the FORCE panel targets. The results are broken down by sample type. High quality includes family references, additional non-probative reference samples, and control DNAs.
| Sample Type | Count | Maximum Possible SNPs | Called SNPs * | |||||
|---|---|---|---|---|---|---|---|---|
| Count | Percentage | |||||||
| Minimum | Maximum | Average | Minimum | Maximum | Average | |||
| Male, high quality |
11 | 5422 | 5133 | 5395 | 5355 | 94.7% | 99.5% | 98.8% |
| Female, high quality |
12 | 4593 | 4396 | 4582 | 4552 | 95.7% | 99.8% | 99.1% |
| Bone (all male) |
12 | 5422 | 11 | 5361 | 2407 | 0.2% | 98.9% | 44.4% |
| Control blank | 7 | 5422 | 0 | 26 | 4 | 0.0% | 0.5% | 0.1% |
* ≥10X coverage, homozygous genotype ≥ 90% allele frequency; heterozygous genotype ≥ 30% minor allele frequency.