TABLE 1.
Group | Gene locus | Chromosome | Location | Strand direction | CDS (bp) | Intron | Predicted protein (aa) | pI | MW (kDa) | Zing finger domain | Predicted subcellular location |
I | CA01g04040 | 01 | 6602752–6603225 | – | 474 | 0 | 157 | 8.59 | 16.91 | A20-AN1 | Chloroplast, Nucleus, Cytoplasm |
II | CA02g10410 | 02 | 129918896–129919300 | – | 405 | 0 | 134 | 8.88 | 15.28 | A20-AN1 | Nucleus, Chloroplast |
CA03g17080 | 03 | 196705800–196706183 | – | 384 | 0 | 127 | 7.95 | 14.21 | AN1 | Chloroplast, Nucleus, Cytoplasm | |
CA00g44110 | nd | nd | 426 | 0 | 141 | 8.88 | 15.76 | A20-AN1 | Nucleus | ||
III | CA10g16510 | 10 | 220169266–220169757 | – | 492 | 0 | 163 | 7.53 | 18.09 | A20-AN1 | Chloroplast |
CA12g06430 | 12 | 22845946–22846587 | + | 642 | 0 | 213 | 8.25 | 23.52 | A20-AN1 | Mitochondria, Chloroplast, Cytosol | |
IV | CA01g16220 | 01 | 101708816–101709355 | + | 540 | 0 | 179 | 7.94 | 19.16 | A20-AN1 | Chloroplast |
CA01g19950 | 01 | 160637657–160638169 | + | 513 | 0 | 170 | 8.43 | 18.33 | A20-AN1 | Chloroplast | |
CA10g20690 | 10 | 230827282–230827800 | + | 519 | 0 | 172 | 8.62 | 18.23 | A20-AN1 | Nucleus | |
V | CA01g19980 | 01 | 160706592–160707140 | + | 555 | 0 | 184 | 9.12 | 20.26 | A20-AN1 | Nucleus |
CA12g22410 | 12 | 234718042–234718554 | – | 513 | 0 | 170 | 9.25 | 19.19 | AN1 | Nucleus | |
VI | CA02g29220 | 02 | 168266440–168267317 | – | 570 | 1 | 189 | 8.96 | 20.81 | AN1-AN1 | Nucleus |
CA05g01100 | 05 | 1965718–1969104 | – | 834 | 1 | 277 | 8.70 | 31.25 | AN1-AN1-C2H2-C2H2 | Chloroplast, Nucleus | |
CA10g19590 | 10 | 228970650–228973903 | + | 822 | 1 | 273 | 8.79 | 30.28 | AN1-AN1-C2H2-C2H2 | Nucleus |
Gene locus and location are from Capsicum annuum cv ‘CM334’ genome (release 1.55). Domain analysis is performed using a web tool SMART (Simple Modular Architecture Research Tool; http://smart.embl.de/) Subcellular localization of protein is predicted using a web tool WOLF PSORT (http://www.genscript.com/wolf-psort.html). nd, not detected due to unsequenced portion of gene.