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AlphaFold 2 structure prediction parameters.
| Parameter | Value |
|---|---|
| homooligomer | 1 |
| msa_method | mmseqs2 |
| msa_format | fas |
| pair_mode | unpaired |
| pair_cov | 50 |
| pair_qid | 20 |
| rank_by | pLDDT |
| use_turbo | True |
| max_msa | 512:1024 |
| show_images | True |
| num_models | 5 |
| use_ptm | True |
| num_ensemble | 1 |
| max_recycles | 3 |
| tol | 0 |
| num_samples | 1 |
| subsample_msa | True |
| num_relax | None |
