| BUSCO | Benchmarking Universal Single-Copy Orthologs |
| CM | covariance model |
| Hh | Hedgehog |
| HMM | Hidden Markov Models |
| HOX | homeobox |
| lncRNA | long non-coding RNA |
| ML | Maximum Likelihood |
| miRNA | microRNA |
| misc RNAs | miscellaneous RNAs |
| ncRNA | non-coding RNA |
| RMST | Rhabdomyosarcoma 2-associated transcript |
| rRNA | ribosomal RNA |
| snRNA | small nuclear RNA |
| snoRNA | small nucleolar RNA |
| tRNA | transfer RNA |
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