Table 3.
Average values for annotating the genomic features of different assemblies from monocultures and mixed cultures of E. coli and K. pneumoniae isolates. IllumASM was produced using Unicycler, MinIONASM using Flye and HybASM was created using Unicycler. The mixed culture was obtained from the co-culturing of E. coli 4 and K. pneumoniae 5 isolates. Numbers show the average ± SD.
| CDS | rRNA | tRNA | tmRNA | ||
|---|---|---|---|---|---|
| E. coli | IllumASM | 4952 ± 392 | 5 ± 1 | 83 ± 5 | 1 ± 0 |
| MinIONASM | 6715 ± 4615 | 12 ± 10 | 63 ± 44 | 1 ± 1 | |
| HybASM | 5042 ± 532 | 15 ± 9 | 88 ± 11 | 1 ± 0 | |
| K. pneumoniae | IllumASM | 5201 ± 185 | 4 ± 1 | 79 ± 1 | 1 ± 0 |
| MinIONASM | 8120 ± 3933 | 20 ± 10 | 67 ± 36 | 1 ± 1 | |
| HybASM | 5261 ± 217 | 21 ± 8 | 84 ± 4 | 1 ± 0 | |
| Mixed culture sample | IllumASM | 10,660 | 8 | 164 | 2 |
| MinIONASM | 20,158 | 47 | 181 | 2 | |
| HybASM | 10,995 | 44 | 184 | 2 |