Table 2.

Recombination events detected by RDR5 program between SPV1 isolates. Only recombination events supported by five or more methods were considered; sequences analyzed in detail are in bold. Methods: R = RDP5, G = GeneConv, B = Bootscan, M = MaxChi, C = Chimaera, S = SiScan, T = Topal.

Sequence	Recombination Event Detected				Average p-Value	Detection Results
(acc. num.)	Region 1		Region 2		(RDP)	R	G	B	M	C	S	T
	nt	Gene(s)	nt	Gene
MK142237	1–658	P0, P1	5276–5990	P5	1.24 × 10−14	+	+	+	+	+	+	+
MZ351170	1–1129	P0, P1	5579–5990	P5	2.46 × 10−2	+	-	+	+	+	+	+
MZ351171	889–1660	P1	-	-	1.15 × 10−2	+	+	+	+	+	+	+
MZ351169	1298–1660	P1	-	-	5.14 × 10−3	+	+	+	+	+	+	+
MZ351173	1–1624	P0, P1	5286–5990	P5	1.64 × 10−4	+	+	+	+	+	+	+
MZ328111	1–888	P0, P1	5949–5990	-	1.66 × 10−3	+	+	+	+	+	+	+
MZ328111	3146–3848	P1–2	-	-	3.22 × 10−9	+	+	+	+	+	+	+
MZ351169	1661–2451	P1–2	-	-	1.74 × 10−5	+	+	+	+	+	+	+
MZ351171	1661–2656	P1–2	-	-	3.41 × 10−6	+	+	+	+	+	+	+