Table 1.

RNA-seq datasets. Each publicly available dataset’s accession number, RNA-seq type, and information about each study.

GEO Accession	Study Design	Sample Source	Sample Size	Number of COVID Patients	Number of Healthy Control	Type
GSE171668 [12]	COVID-19 autopsy biobank of 420 autopsy specimens, spanning 11 organs and 17 donors.	Various organs (lung, kidney, liver, heart)	118	17	0	Single-cell RNA-seq
GSE168215 [13]	Bronchial brushings from 4 patients with COVID-19 were obtained at Northwestern Memorial ICU.	Lung	9	4	0	Single-cell RNA-seq
GSE150316 [14]	Autopsy samples from patients deceased due to SARS-CoV-2 infection were collected for total RNA-seq analysis to assess viral load and immune response.	Lung, liver, heart, jejunum, bowel, kidney, placenta	88	5	5 samples (patient # not indicated)	Bulk RNA-seq
GSE162835 [15]	Shotgun transcriptome sequencing of human RNA obtained from nasopharyngeal swabs of patients with COVID-19.	Nasopharyngeal swabs	50	50	0	Bulk RNA-seq