Table 4.
Comparison of the lineages determined with full-length genomes and the S1-encoding region based on key positions.
| Full Length Genome (Illumina) | Spike S1 Region (PacBio) | |||
|---|---|---|---|---|
| Clade | Lineage | n | Lineage | n |
| 20A | B.1.221 | 8 | B.1.221 | 8 |
| 20A | B.1 | 4 | NA | 4 |
| 20A | B.1.214 | 1 | NA | 1 |
| 20A | B.1.160 | 37 | B.1.160 | 37 |
| 20B | B.1.1.186 | 1 | NA | 1 |
| 20B | B.1.1.241 | 3 | NA | 3 |
| 20B | B.1.1.28 | 1 | NA | 1 |
| 20B | B.1.1.317 | 2 | NA | 2 |
| 20C | B.1 | 1 | NA | 1 |
| 20E (EU1) | B.1.177 | 37 | B.1.177 | 37 |
| 20G | B.1.2 | 1 | NA | 1 |
| 20H | B.1.351 | 2 | B.1.351 | 2 |
| 20I | B.1.1.7 | 45 | B.1.1.7 | 45 |
| 21A | B.1.617.2 | 17 | B.1.617.2 | 43 |
| 21A | AY.4 | 16 | ||
| 21A | AY.34 | 4 | ||
| 21A | AY.9 | 4 | ||
| 21A | AY.23 | 1 | ||
| 21A | AY.7.1 | 1 | ||
NA: not assigned.