Table 6.
The list of differentially abundance protein in all treatments during different times.
Uniprot Accession Number | Protein Name | Unique Peptide Sequences | Number of Unique Peptide | Unique Sequence Coverage (%) | Q-Value | Log2 Abundance of Protein 1 | ||||||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
WK0 | WK7 | WK14 | WK0 | WK7 | WK14 | |||||||||||||||||||
T1 | T2 | T3 | T1 | T2 | T3 | T1 | T2 | T3 | T4 | T5 | T6 | T4 | T5 | T6 | T4 | T5 | T6 | |||||||
1. | A0A1D5P6I3 | Conserved oligomeric Golgi complex subunit 1 | LDADCERVETR | 1 | 1.2 | 1.00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 11.72 | 0 | 0 | 13.42 |
2. | Q9PTK0 | Homeodomain protein | AEPGALK | 10 | 26.6 | 1.00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 11.93 | 0 | 0 | 14.90 |
3. | Q9DEA6 | Tropomodulin | ACAEALKTNTYVK | 1 | 4.1 | 1.00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 12.91 | 0 | 0 | 12.82 |
4. | A0A089FGZ7 | MHC class I antigen | GITGDELIDCGSMWQVTHSEGTQNRRR | 1 | 7.8 | 1.00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 13.11 | 0 | 0 | 15.70 |
5. | Q5ZHK3 | ABC transporter domain-containing protein | EAERLAHEDAECEKLMEFYER | 4 | 14.1 | 1.00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 13.34 | 0 | 0 | 13.12 |
6. | Q7T269 | Forkhead transcription factor L2 | KPPYSYVALIAMAIR | 4 | 28.2 | 1.00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 13.51 | 0 | 0 | 11.75 |
7. | A0A3Q2TVB9 | Protein Mdm4 | MTSSSSAQHPAAENACR | 2 | 7.2 | 1.00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 13.94 | 0 | 0 | 15.82 |
8. | Q5ZQU2 | Neuronal PAS domain-containing protein 2 | DSGSSLDPEQHFNALDIGASILSASR | 2 | 6.4 | 1.00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 14.24 | 0 | 0 | 17.16 |
9. | B3VMQ8 | CD3 epsilon chain | AAAGSRPRAQKMQRPPPVPNPDYEPIR | 2 | 16.6 | 0.99 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 14.42 | 0 | 0 | 12.12 |
10. | H6UQ73 | Gonadotrophin releasing hormone-II | DQAEKRSQVVER | 1 | 2.2 | 0.99 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 15.04 | 0 | 0 | 15.39 |
11. | A0A1D5PT78 | Lipopolysaccharide-binding protein | DWSLPYHSGSSR | 3 | 6.6 | 1.00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 15.48 | 0 | 0 | 15.67 |
12. | O42561 | Apoptosis associated protein | FGELTGGVTNAFCR | 4 | 73.2 | 1.00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 16.60 | 0 | 0 | 16.29 |
13. | Q3YAE7 | Telomerase reverse transcriptase isoform I | LILRVHGIELINNHLMQLFFTFLT | 2 | 60 | 0.99 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 13.05 | 0 | 0 |
14. | G0W2S9 | Low-density lipoprotein receptor-related protein-2 | HCNISHCAALSCQYRC | 1 | 5 | 1.00 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 14.37 |
15. | A0A1D5P5R0 | Heat shock protein HSP 90-alpha | DKEEVFRLIPYGIFQSK | 1 | 5.3 | 1.00 | 0 | 12.73 | 0 | 0 | 0 | 0 | 0 | 0 | 9.49 | 0 | 0 | 0 | 0 | 0 | 12.12 | 11.89 | 10.97 | 0 |
16. | O73885 | Heat shock cognate 71 kDa protein (Heat shock 70 kDa protein 8) | ARFEKLNADLFR | 11 | 21.5 | 0.99 | 15.05 | 13.23 | 0 | 14.10 | 15.67 | 0 | 0 | 0 | 0 | 16.76 | 15.70 | 0 | 15.54 | 11.50 | 12.01 | 0 | 0 | 13.62 |
17. | V9IPH9 | 3-hydroxy-3-methylglutaryl-coenzyme A reductase | LGVQGASQDNPGENAR | 2 | 85 | 0.99 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 12.65 | 0 | 12.36 | 15.34 | 15.39 | 0 | 0 | 0 | 12.36 |
18. | P12276 | Fatty acid synthase | AGVAFHSYYMASIAPALLSALK | 9 | 4.8 | 0.99 | 0 | 0 | 0 | 18.282 | 14.97 | 13.93 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 0 | 11.38 | 0 | 0 |
19. | A0A0N7G7I8 | Adipocyte-type fatty acid-binding protein | CDQFVGTWK | 2 | 27.3 | 0.99 | 0 | 0 | 12.41 | 0 | 15.98 | 0 | 11.94 | 0 | 0 | 13.77 | 0 | 0 | 0 | 14.20 | 12.68 | 14.67 | 0 | 12.74 |
1 The level of proteins in each samples were presented as log2 value; GPR: germinated paddy rice; LSD: low stocking density; HSD: high stocking density; T1: LSD + 0 g/kg GPR; T2: LSD + 74 g/kg GPR; T3: LSD + 148 g/kg GPR; T4: HSD + 0 g/kg GPR; T5: HSD + 74 g/kg GPR; T6: HSD + 148 g/kg GPR; WK0: at 0 week (early interval times); WK7: at 7 week (middle interval times); WK14: during at 14 week (late interval times).