Table 2.
Details of competing endogenous RNA (ceRNA) axes.
| DElncRNA(s) | Shared miRNA(s) | DEmRNA(s) | Sample | Expression of DElncRNA(s) and DEmRNA(s) |
|---|---|---|---|---|
| DLX6-AS1 | hsa-miR-22-3p | ACVR1C, BDNF | HPC | Down |
| DLX6-AS1 |
hsa-miR-124-3p hsa-miR-132-3p hsa-miR-15a-5p |
BDNF | HPC | Down |
| DLX6-AS1 | hsa-miR-708-5p | NNAT | HPC | Down |
| BABAM2-AS1, NEAT1, LINC01094 | hsa-miR-30b-5p | BCL6 | HPC | Up |
| NEAT1 | hsa-miR-9-5p | BCL6, TGFBI, TGFBR2 | HPC | Up |
| LINC01094, NEAT1 | hsa-miR-132-3p | CDKN1A | HPC | Up |
| NEAT1 | hsa-miR-22-3p | CDKN1A | HPC | Up |
| BABAM2-AS1, LINC01094, NEAT1 | hsa-miR-17-5p | CDKN1A, TGFBR2, VEGFA | HPC | Up |
| NEAT1, LINC01094 | hsa-miR-29a-3p | FGG, TET1, VEGFA, ZFP36, TNFAIP3, MCL1, CD93 | HPC | Up |
| LINC01094, NEAT1 | hsa-miR-7-5p | FOS | HPC | Up |
| NEAT1, LINC01094 | hsa-miR-29c-3p | MCL1, FGG, VEGFA | HPC | Up |
| LINC01094, MINCR, NEAT1 | hsa-miR-23a-3p | MT2A, HMGB2 | HPC | Up |
| NEAT1 | hsa-miR-126-3p | NFKBIA, PIK3R2, ADM, VEGFA | HPC | Up |
| PAX8-AS1, LINC01094, NEAT1 | hsa-miR-29b-3p | TET1, FOS, ANGPTL4, AQP4, FGG, VEGFA, TNFAIP3, MCL1 | HPC | Up |
| BABAM2-AS1, PAX8-AS1, LINC01094, NEAT1 | hsa-miR-20b-5p | VEGFA, CDKN1A | HPC | Up |
| LINC01094, NEAT1 | hsa-miR-195-5p | VEGFA, FGF2 | HPC | Up |
| NEAT1, DLGAP1-AS1 | hsa-miR-15a-5p | VEGFA, IL10RA, HSPA1B | HPC | Up |
| PAX8-AS1, LINC01094, NEAT1, MINCR | hsa-miR-34a-5p | VEGFA, NAMPT, FOS, CD44 | HPC | Up |
| NEAT1 | hsa-miR-126-5p | VEGFA | HPC | Up |
| NEAT1, LINC01094, DLGAP1-AS1 | hsa-miR-15b-5p | VEGFA | HPC | Up |
| NEAT1 | hsa-miR-126-3p | ADM, SOX2, VEGFA, MERTK, NFKBIA | BA46 | Up |
| NEAT1, LINC01094 | hsa-miR-30b-5p | BCL6, CAT | BA46 | Up |
| NEAT1 | hsa-miR-22-3p | CDKN1A, BMPR1B | BA46 | Up |
| LINC01094, NEAT1 | hsa-miR-132-3p | CDKN1A | BA46 | Up |
| NEAT1, LINC01094 | hsa-miR-17-5p | CDKN1A, VEGFA | BA46 | Up |
| PAX8-AS1, LINC01094, NEAT1 | hsa-miR-20b-5p | CDKN1A, VEGFA | BA46 | Up |
| NEAT1 | hsa-miR-138-5p | FERMT2, VIM, YAP1 | BA46 | Up |
| ZFHX4-AS1, LINC01094, NEAT1 | hsa-miR-7-5p | FOS | BA46 | Up |
| NEAT1, MINCR, LINC01094, ZFHX4-AS1 | hsa-miR-23a-3p | HMGB2, MT2A | BA46 | Up |
| NEAT1, LINC01094 | hsa-miR-29a-3p | MCL1, ZFP36, TET1, FGG, VEGFA, TNFAIP3, CD93 | BA46 | Up |
| NEAT1, PAX8-AS1, MINCR, LINC01094 | hsa-miR-98-5p | NRAS | BA46 | Up |
| MINCR, PAX8-AS1, LINC01094, ZFHX4-AS1, NEAT1 | hsa-miR-34a-5p | SOX2, VEGFA, NAMPT, CD44, FOS | BA46 | Up |
| NEAT1, PAX8-AS1, LINC01094, MINCR | hsa-let-7 g-5p | TGFBR1 | BA46 | Up |
| LINC01094, NEAT1 | hsa-miR-15b-5p | VEGFA | BA46 | Up |
| LINC01094, PAX8-AS1, NEAT1 | hsa-miR-29b-3p | VEGFA, MCL1, ELAVL1, TNFAIP3, FOS, FGG, AQP4, ANGPTL4, TET1 | BA46 | Up |
| NEAT1, LINC01094 | hsa-miR-29c-3p | VEGFA, MCL1, FGG | BA46 | Up |
| NEAT1 | hsa-miR-126-5p | VEGFA | BA46 | Up |
| ZFHX4-AS1, NEAT1 | hsa-miR-9-5p | VIM, BCL6, ELAVL1, TGFBI | BA46 | Up |
| NEAT1, MINCR | hsa-miR-124-3p | VIM | BA46 | Up |
| NEAT1, LINC01094 | hsa-miR-195-5p | YAP1, VEGFA, FGF2 | BA46 | Up |
| NEAT1 | hsa-miR-15a-5p | YAP1, VEGFA, IL10RA, UCP2, HSPA1B | BA46 | Up |
| DLX6-AS1 | hsa-miR-34a-5p | EPHA5 | STR | Down |
| NEAT1 | hsa-miR-126-3p | ADM, VEGFA, NFKBIA, PIK3R2 | STR | Up |
| LINC01094, NEAT1 | hsa-miR-30b-5p | BCL6 | STR | Up |
| NEAT1 | hsa-miR-22-3p | CDKN1A | STR | Up |
| NEAT1, LINC01094 | hsa-miR-132-3p | CDKN1A | STR | Up |
| MINCR, LINC01094, NEAT1 | hsa-miR-23a-3p | FAS, HMGB2 | STR | Up |
| NEAT1, LINC01094 | hsa-miR-7-5p | FOS | STR | Up |
| LINC01094, MINCR, PAX8-AS1, NEAT1 | hsa-miR-34a-5p | FOS, VEGFA, NAMPT, CD44 | STR | Up |
| LINC01094, NEAT1 | hsa-miR-29a-3p | MCL1, VEGFA, TNFAIP3, CD93, SPARC, ZFP36, FGG | STR | Up |
| MINCR, PAX8-AS1, LINC01094, NEAT1 | hsa-let-7 g-5p | TGFBR1 | STR | Up |
| DLGAP1-AS1, NEAT1 | hsa-miR-15a-5p | UCP2, VEGFA, IL10RA, HSPA1B, YAP1 | STR | Up |
| NEAT1, LINC01094 | hsa-miR-17-5p | VEGFA, CDKN1A | STR | Up |
| PAX8-AS1, NEAT1, LINC01094 | hsa-miR-20b-5p | VEGFA, CDKN1A | STR | Up |
| DLGAP1-AS1, LINC01094, NEAT1 | hsa-miR-15b-5p | VEGFA | STR | Up |
| LINC01094, PAX8-AS1, NEAT1 | hsa-miR-29b-3p | VEGFA, MCL1, ELAVL1, SPARC, ANGPTL4, AQP4, FGG, FOS, TNFAIP3 | STR | Up |
| LINC01094, NEAT1, XIST | hsa-miR-29c-3p | VEGFA, MCL1, FGG, SPARC | STR | Up |
| NEAT1 | hsa-miR-126-5p | VEGFA | STR | Up |
| LINC01094, NEAT1 | hsa-miR-195-5p | VEGFA, YAP1, FGF2 | STR | Up |
| NEAT1 | hsa-miR-9-5p | VIM, ELAVL1, BCL6, TGFBI | STR | Up |
| NEAT1, MINCR | hsa-miR-124-3p | VIM | STR | Up |
| NEAT1 | hsa-miR-138-5p | VIM, YAP1 | STR | Up |
| MALAT1 | hsa-miR-9-5p | STARD13 | LB | Up |
Bold values are common ceRNA axes between all three areas of the brain.
BA46 Brodmann area 46, DElncRNAs differentially expressed lncRNAs, DEmRNAs differentially expressed mRNAs, down downregulation, HPC hippocampus, LB lymphoblast, STR striatum, up upregulation.