Table II.
Variations within the mapped SARS-CoV-2 genome
| Sample ID | Number of variants | SNPs | INS | Del | Nucleotide change | Position | Genes |
|---|---|---|---|---|---|---|---|
| SJHVL | 1 | 1 | 0 | 0 | C/T | 28814 | N |
| SJHCW | 2 | 2 | 0 | 0 | G/T; C/A | 12070; 12114 | ORF1ab |
| SJHCO | 7 | 6 | 1 | 0 | C/A; A/G; G/T; C/CTTACAAAGGCACG; T/A; T/C; A/G | 2880; 3916; 26144; 26212; 28611; 29107; 29125 | ORF1ab; ORF3a, N |
| MKHL2 | 2 | 2 | 0 | 0 | A/G | 3916 | S |
| MKHE | 1 | 1 | 0 | 0 | G/T | 25563 | ORF3a |
| MKHCW | 2 | 2 | 0 | 0 | G/T; T/C | 29179; 29213 | N |
| KGF | 1 | 1 | 0 | 0 | T/C | 17137 | ORF1ab |
| MKHL1 | 1 | 1 | 0 | 0 | A/G | 3916 | ORF1ab |
| Total | 17 | 16 | 1 | 0 |
SNPs- Single Nucleotide polymorphism; INS-Insertion; Del-Deletion.